Dataset Information

Stimulus-aware spatial filtering for single-trial neural response and temporal response function estimation in high-density EEG with applications in auditory research.

ABSTRACT: A common problem in neural recordings is the low signal-to-noise ratio (SNR), particularly when using non-invasive techniques like magneto- or electroencephalography (M/EEG). To address this problem, experimental designs often include repeated trials, which are then averaged to improve the SNR or to infer statistics that can be used in the design of a denoising spatial filter. However, collecting enough repeated trials is often impractical and even impossible in some paradigms, while analyses on existing data sets may be hampered when these do not contain such repeated trials. Therefore, we present a data-driven method that takes advantage of the knowledge of the presented stimulus, to achieve a joint noise reduction and dimensionality reduction without the need for repeated trials. The method first estimates the stimulus-driven neural response using the given stimulus, which is then used to find a set of spatial filters that maximize the SNR based on a generalized eigenvalue decomposition. As the method is fully data-driven, the dimensionality reduction enables researchers to perform their analyses without having to rely on their knowledge of brain regions of interest, which increases accuracy and reduces the human factor in the results. In the context of neural tracking of a speech stimulus using EEG, our method resulted in more accurate short-term temporal response function (TRF) estimates, higher correlations between predicted and actual neural responses, and higher attention decoding accuracies compared to existing TRF-based decoding methods. We also provide an extensive discussion on the central role played by the generalized eigenvalue decomposition in various denoising methods in the literature, and address the conceptual similarities and differences with our proposed method.

SUBMITTER: Das N

PROVIDER: S-EPMC7355237 | biostudies-literature | 2020 Jan

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Stimulus-aware spatial filtering for single-trial neural response and temporal response function estimation in high-density EEG with applications in auditory research.

Das Neetha N Vanthornhout Jonas J Francart Tom T Bertrand Alexander A

NeuroImage 20190920

A common problem in neural recordings is the low signal-to-noise ratio (SNR), particularly when using non-invasive techniques like magneto- or electroencephalography (M/EEG). To address this problem, experimental designs often include repeated trials, which are then averaged to improve the SNR or to infer statistics that can be used in the design of a denoising spatial filter. However, collecting enough repeated trials is often impractical and even impossible in some paradigms, while analyses on ...[more]

PMID: 31546052

Similar Datasets

Project description:Humans are able to identify and track a target speaker amid a cacophony of acoustic interference, an ability which is often referred to as the cocktail party phenomenon. Results from several decades of studying this phenomenon have culminated in recent years in various promising attempts to decode the attentional state of a listener in a competing-speaker environment from non-invasive neuroimaging recordings such as magnetoencephalography (MEG) and electroencephalography (EEG). To this end, most existing approaches compute correlation-based measures by either regressing the features of each speech stream to the M/EEG channels (the decoding approach) or vice versa (the encoding approach). To produce robust results, these procedures require multiple trials for training purposes. Also, their decoding accuracy drops significantly when operating at high temporal resolutions. Thus, they are not well-suited for emerging real-time applications such as smart hearing aid devices or brain-computer interface systems, where training data might be limited and high temporal resolutions are desired. In this paper, we close this gap by developing an algorithmic pipeline for real-time decoding of the attentional state. Our proposed framework consists of three main modules: (1) Real-time and robust estimation of encoding or decoding coefficients, achieved by sparse adaptive filtering, (2) Extracting reliable markers of the attentional state, and thereby generalizing the widely-used correlation-based measures thereof, and (3) Devising a near real-time state-space estimator that translates the noisy and variable attention markers to robust and statistically interpretable estimates of the attentional state with minimal delay. Our proposed algorithms integrate various techniques including forgetting factor-based adaptive filtering, ?1-regularization, forward-backward splitting algorithms, fixed-lag smoothing, and Expectation Maximization. We validate the performance of our proposed framework using comprehensive simulations as well as application to experimentally acquired M/EEG data. Our results reveal that the proposed real-time algorithms perform nearly as accurately as the existing state-of-the-art offline techniques, while providing a significant degree of adaptivity, statistical robustness, and computational savings.

Project description:Estimating the latent dynamics underlying biological processes is a central problem in computational biology. State-space models with Gaussian statistics are widely used for estimation of such latent dynamics and have been successfully utilized in the analysis of biological data. Gaussian statistics, however, fail to capture several key features of the dynamics of biological processes (e.g., brain dynamics) such as abrupt state changes and exogenous processes that affect the states in a structured fashion. Although Gaussian mixture process noise models have been considered as an alternative to capture such effects, data-driven inference of their parameters is not well-established in the literature. The objective of this paper is to develop efficient algorithms for inferring the parameters of a general class of Gaussian mixture process noise models from noisy and limited observations, and to utilize them in extracting the neural dynamics that underlie auditory processing from magnetoencephalography (MEG) data in a cocktail party setting. We develop an algorithm based on Expectation-Maximization to estimate the process noise parameters from state-space observations. We apply our algorithm to simulated and experimentally-recorded MEG data from auditory experiments in the cocktail party paradigm to estimate the underlying dynamic Temporal Response Functions (TRFs). Our simulation results show that the richer representation of the process noise as a Gaussian mixture significantly improves state estimation and capturing the heterogeneity of the TRF dynamics. Application to MEG data reveals improvements over existing TRF estimation techniques, and provides a reliable alternative to current approaches for probing neural dynamics in a cocktail party scenario, as well as attention decoding in emerging applications such as smart hearing aids. Our proposed methodology provides a framework for efficient inference of Gaussian mixture process noise models, with application to a wide range of biological data with underlying heterogeneous and latent dynamics.

Project description:Schizophrenia is a complex disorder about which much is still unknown. Potential treatments, such as transcranial magnetic stimulation (TMS), have not been exploited, in part because of the variability in behavioral response. This can be overcome with the use of response biomarkers. It has been however shown that repetitive transcranial magnetic stimulation (rTMS) can the relieve positive and negative symptoms of schizophrenia, particularly auditory verbal hallucinations (AVH). This exploratory work aims to establish a quantitative methodological tool, based on high-density electroencephalogram (HD-EEG) data analysis, to assess the effect of rTMS on patients with schizophrenia and AVH. Ten schizophrenia patients with drug-resistant AVH were divided into two groups: the treatment group (TG) received 1 Hz rTMS treatment during 10 daily sessions (900 pulses/session) over the left T3-P3 International 10-20 location. The control group (CG) received rTMS treatment over the Cz (vertex) EEG location. We used the P300 oddball auditory paradigm, known for its reduced amplitude in schizophrenia with AVH, and recorded high-density electroencephalography (HD-EEG, 256 channels), twice for each patient: pre-rTMS and 1 week post-rTMS treatment. The use of HD-EEG enabled the analysis of the data in the time domain, but also in the frequency and source-space connectivity domains. The HD-EEG data were linked with the clinical outcome derived from the auditory hallucinations subscale (AHS) of the Psychotic Symptom Rating Scale (PSYRATS), the Quality of Life Scale (QoLS), and the Depression, Anxiety and Stress Scale (DASS). The general results show a variability between subjects, independent of the group they belong to. The time domain showed a higher N1-P3 amplitude post-rTMS, the frequency domain a higher power spectral density (PSD) in the alpha and beta bands, and the connectivity analysis revealed a higher brain network integration (quantified using the participation coefficient) in the beta band. Despite the small number of subjects and the high variability of the results, this work shows a robust data analysis and an interplay between morphology, spectral, and connectivity data. The identification of a trend post-rTMS for each domain in our results is a first step toward the definition of quantitative neurophysiological parameters to assess rTMS treatment.

Dataset Information

Stimulus-aware spatial filtering for single-trial neural response and temporal response function estimation in high-density EEG with applications in auditory research.

Publications

Stimulus-aware spatial filtering for single-trial neural response and temporal response function estimation in high-density EEG with applications in auditory research.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets