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Keratoconus-susceptibility gene identification by corneal thickness genome-wide association study and artificial intelligence IBM Watson.


ABSTRACT: Keratoconus is a common ocular disorder that causes progressive corneal thinning and is the leading indication for corneal transplantation. Central corneal thickness (CCT) is a highly heritable characteristic that is associated with keratoconus. In this two-stage genome-wide association study (GWAS) of CCT, we identified a locus for CCT, namely STON2 rs2371597 (P?=?2.32 × 10-13), and confirmed a significant association between STON2 rs2371597 and keratoconus development (P?=?0.041). Additionally, strong STON2 expression was observed in mouse corneal epithelial basal cells. We also identified SMAD3 rs12913547 as a susceptibility locus for keratoconus development using predictive analysis with IBM's Watson question answering computer system (P?=?0.001). Further GWAS analyses combined with Watson could effectively reveal detailed pathways underlying keratoconus development.

SUBMITTER: Hosoda Y 

PROVIDER: S-EPMC7395727 | biostudies-literature | 2020 Jul

REPOSITORIES: biostudies-literature

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Keratoconus is a common ocular disorder that causes progressive corneal thinning and is the leading indication for corneal transplantation. Central corneal thickness (CCT) is a highly heritable characteristic that is associated with keratoconus. In this two-stage genome-wide association study (GWAS) of CCT, we identified a locus for CCT, namely STON2 rs2371597 (P = 2.32 × 10<sup>-13</sup>), and confirmed a significant association between STON2 rs2371597 and keratoconus development (P = 0.041). A  ...[more]

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