Dataset Information

Higher SNR PET image prediction using a deep learning model and MRI image.

ABSTRACT: PET images often suffer poor signal-to-noise ratio (SNR). Our objective is to improve the SNR of PET images using a deep neural network (DNN) model and MRI images without requiring any higher SNR PET images in training. Our proposed DNN model consists of three modified U-Nets (3U-net). The PET training input data and targets were reconstructed using filtered-backprojection (FBP) and maximum likelihood expectation maximization (MLEM), respectively. FBP reconstruction was used because of its computational efficiency so that the trained network not only removes noise, but also accelerates image reconstruction. Digital brain phantoms downloaded from BrainWeb were used to evaluate the proposed method. Poisson noise was added into sinogram data to simulate a 6?min brain PET scan. Attenuation effect was included and corrected before the image reconstruction. Extra Poisson noise was introduced to the training inputs to improve the network denoising capability. Three independent experiments were conducted to examine the reproducibility. A lesion was inserted into testing data to evaluate the impact of mismatched MRI information using the contrast-to-noise ratio (CNR). The negative impact on noise reduction was also studied when miscoregistration between PET and MRI images occurs. Compared with 1U-net trained with only PET images, training with PET/MRI decreased the mean squared error (MSE) by 31.3% and 34.0% for 1U-net and 3U-net, respectively. The MSE reduction is equivalent to an increase in the count level by 2.5 folds and 2.9 folds for 1U-net and 3U-net, respectively. Compared with the MLEM images, the lesion CNR was improved 2.7 folds and 1.4 folds for 1U-net and 3U-net, respectively. The results show that the proposed method could improve the PET SNR without having higher SNR PET images.

SUBMITTER: Liu CC

PROVIDER: S-EPMC7413624 | biostudies-literature | 2019 May

REPOSITORIES: biostudies-literature

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Higher SNR PET image prediction using a deep learning model and MRI image.

Liu Chih-Chieh CC Qi Jinyi J

Physics in medicine and biology 20190523 11

PET images often suffer poor signal-to-noise ratio (SNR). Our objective is to improve the SNR of PET images using a deep neural network (DNN) model and MRI images without requiring any higher SNR PET images in training. Our proposed DNN model consists of three modified U-Nets (3U-net). The PET training input data and targets were reconstructed using filtered-backprojection (FBP) and maximum likelihood expectation maximization (MLEM), respectively. FBP reconstruction was used because of its compu ...[more]

PMID: 30844784

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Project description:PurposeImage quality of positron emission tomography (PET) is limited by various physical degradation factors. Our study aims to perform PET image denoising by utilizing prior information from the same patient. The proposed method is based on unsupervised deep learning, where no training pairs are needed.MethodsIn this method, the prior high-quality image from the patient was employed as the network input and the noisy PET image itself was treated as the training label. Constrained by the network structure and the prior image input, the network was trained to learn the intrinsic structure information from the noisy image and output a restored PET image. To validate the performance of the proposed method, a computer simulation study based on the BrainWeb phantom was first performed. A 68Ga-PRGD2 PET/CT dataset containing 10 patients and a 18F-FDG PET/MR dataset containing 30 patients were later on used for clinical data evaluation. The Gaussian, non-local mean (NLM) using CT/MR image as priors, BM4D, and Deep Decoder methods were included as reference methods. The contrast-to-noise ratio (CNR) improvements were used to rank different methods based on Wilcoxon signed-rank test.ResultsFor the simulation study, contrast recovery coefficient (CRC) vs. standard deviation (STD) curves showed that the proposed method achieved the best performance regarding the bias-variance tradeoff. For the clinical PET/CT dataset, the proposed method achieved the highest CNR improvement ratio (53.35% ± 21.78%), compared with the Gaussian (12.64% ± 6.15%, P = 0.002), NLM guided by CT (24.35% ± 16.30%, P = 0.002), BM4D (38.31% ± 20.26%, P = 0.002), and Deep Decoder (41.67% ± 22.28%, P = 0.002) methods. For the clinical PET/MR dataset, the CNR improvement ratio of the proposed method achieved 46.80% ± 25.23%, higher than the Gaussian (18.16% ± 10.02%, P < 0.0001), NLM guided by MR (25.36% ± 19.48%, P < 0.0001), BM4D (37.02% ± 21.38%, P < 0.0001), and Deep Decoder (30.03% ± 20.64%, P < 0.0001) methods. Restored images for all the datasets demonstrate that the proposed method can effectively smooth out the noise while recovering image details.ConclusionThe proposed unsupervised deep learning framework provides excellent image restoration effects, outperforming the Gaussian, NLM methods, BM4D, and Deep Decoder methods.

Project description:BackgroundA variety of external factors might seriously degrade PET image quality and lead to inconsistent results. The aim of this study is to explore a potential PET image quality assessment (QA) method with deep learning (DL).MethodsA total of 89 PET images were acquired from Peking Union Medical College Hospital (PUMCH) in China in this study. Ground-truth quality for images was assessed by two senior radiologists and classified into five grades (grade 1, grade 2, grade 3, grade 4, and grade 5). Grade 5 is the best image quality. After preprocessing, the Dense Convolutional Network (DenseNet) was trained to automatically recognize optimal- and poor-quality PET images. Accuracy (ACC), sensitivity, specificity, receiver operating characteristic curve (ROC), and area under the ROC Curve (AUC) were used to evaluate the diagnostic properties of all models. All indicators of models were assessed using fivefold cross-validation. An image quality QA tool was developed based on our deep learning model. A PET QA report can be automatically obtained after inputting PET images.ResultsFour tasks were generated. Task2 showed worst performance in AUC,ACC, specificity and sensitivity among 4 tasks, and task1 showed unstable performance between training and testing and task3 showed low specificity in both training and testing. Task 4 showed the best diagnostic properties and discriminative performance between poor image quality (grade 1, grade 2) and good quality (grade 3, grade 4, grade 5) images. The automated quality assessment of task 4 showed ACC = 0.77, specificity = 0.71, and sensitivity = 0.83, in the train set; ACC = 0.85, specificity = 0.79, and sensitivity = 0.91, in the test set, respectively. The ROC measuring performance of task 4 had an AUC of 0.86 in the train set and 0.91 in the test set. The image QA tool could output basic information of images, scan and reconstruction parameters, typical instances of PET images, and deep learning score.ConclusionsThis study highlights the feasibility of the assessment of image quality in PET images using a deep learning model, which may assist with accelerating clinical research by reliably assessing image quality.

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Dataset Information

Higher SNR PET image prediction using a deep learning model and MRI image.

Publications

Higher SNR PET image prediction using a deep learning model and MRI image.

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