Dataset Information

Draft Genome Sequence of Aeromonas sobria Strain CHT-30, Isolated from a Diseased Rainbow Trout (Oncorhynchus mykiss) in Peru.

ABSTRACT: The Gram-negative bacterium Aeromonas sobria is an opportunistic pathogen that affects humans and animals, including fish. Here, we report the draft genome of strain CHT-30, which was isolated from a diseased rainbow trout in Peru. The genome size is 4.91?Mb, with a G+C content of 57.7%, and the genome includes 4,820 coding sequences.

SUBMITTER: Mesias F

PROVIDER: S-EPMC7427183 | biostudies-literature | 2020 Aug

REPOSITORIES: biostudies-literature

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Draft Genome Sequence of Aeromonas sobria Strain CHT-30, Isolated from a Diseased Rainbow Trout (Oncorhynchus mykiss) in Peru.

Mesías Fernando F Gerpe Diego D Hurtado Carmen C Llanco Luis L Serrano-Martínez Enrique E Romalde Jesús L JL

Microbiology resource announcements 20200813 33

The Gram-negative bacterium <i>Aeromonas sobria</i> is an opportunistic pathogen that affects humans and animals, including fish. Here, we report the draft genome of strain CHT-30, which was isolated from a diseased rainbow trout in Peru. The genome size is 4.91 Mb, with a G+C content of 57.7%, and the genome includes 4,820 coding sequences. ...[more]

PMID: 32817145

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Project description:BackgroundGenetic maps characterizing the inheritance patterns of traits and markers have been developed for a wide range of species and used to study questions in biomedicine, agriculture, ecology and evolutionary biology. The status of rainbow trout genetic maps has progressed significantly over the last decade due to interest in this species in aquaculture and sport fisheries, and as a model research organism for studies related to carcinogenesis, toxicology, comparative immunology, disease ecology, physiology and nutrition. We constructed a second generation genetic map for rainbow trout using microsatellite markers to facilitate the identification of quantitative trait loci for traits affecting aquaculture production efficiency and the extraction of comparative information from the genome sequences of model fish species.ResultsA genetic map ordering 1124 microsatellite loci spanning a sex-averaged distance of 2927.10 cM (Kosambi) and having 2.6 cM resolution was constructed by genotyping 10 parents and 150 offspring from the National Center for Cool and Cold Water Aquaculture (NCCCWA) reference family mapping panel. Microsatellite markers, representing pairs of loci resulting from an evolutionarily recent whole genome duplication event, identified 180 duplicated regions within the rainbow trout genome. Microsatellites associated with genes through expressed sequence tags or bacterial artificial chromosomes produced comparative assignments with tetraodon, zebrafish, fugu, and medaka resulting in assignments of homology for 199 loci.ConclusionThe second generation NCCCWA genetic map provides an increased microsatellite marker density and quantifies differences in recombination rate between the sexes in outbred populations. It has the potential to integrate with cytogenetic and other physical maps, identifying paralogous regions of the rainbow trout genome arising from the evolutionarily recent genome duplication event, and anchoring a comparative map with the zebrafish, medaka, tetraodon, and fugu genomes. This resource will facilitate the identification of genes affecting traits of interest through fine mapping and positional cloning of candidate genes.

Dataset Information

Draft Genome Sequence of Aeromonas sobria Strain CHT-30, Isolated from a Diseased Rainbow Trout (Oncorhynchus mykiss) in Peru.

Publications

Draft Genome Sequence of Aeromonas sobria Strain CHT-30, Isolated from a Diseased Rainbow Trout (Oncorhynchus mykiss) in Peru.

Similar Datasets

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