Dataset Information

Machine Learning Magnetic Parameters from Spin Configurations.

ABSTRACT: Hamiltonian parameters estimation is crucial in condensed matter physics, but is time- and cost-consuming. High-resolution images provide detailed information of underlying physics, but extracting Hamiltonian parameters from them is difficult due to the huge Hilbert space. Here, a protocol for Hamiltonian parameters estimation from images based on a machine learning (ML) architecture is provided. It consists in learning a mapping between spin configurations and Hamiltonian parameters from a small amount of simulated images, applying the trained ML model to a single unexplored experimental image to estimate its key parameters, and predicting the corresponding materials properties by a physical model. The efficiency of the approach is demonstrated by reproducing the same spin configuration as the experimental one and predicting the coercive field, the saturation field, and even the volume of the experiment specimen accurately. The proposed approach paves a way to achieve a stable and efficient parameters estimation.

SUBMITTER: Wang D

PROVIDER: S-EPMC7435232 | biostudies-literature | 2020 Aug

REPOSITORIES: biostudies-literature

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Machine Learning Magnetic Parameters from Spin Configurations.

Wang Dingchen D Wei Songrui S Yuan Anran A Tian Fanghua F Cao Kaiyan K Zhao Qizhong Q Zhang Yin Y Zhou Chao C Song Xiaoping X Xue Dezhen D Yang Sen S

Advanced science (Weinheim, Baden-Wurttemberg, Germany) 20200701 16

Hamiltonian parameters estimation is crucial in condensed matter physics, but is time- and cost-consuming. High-resolution images provide detailed information of underlying physics, but extracting Hamiltonian parameters from them is difficult due to the huge Hilbert space. Here, a protocol for Hamiltonian parameters estimation from images based on a machine learning (ML) architecture is provided. It consists in learning a mapping between spin configurations and Hamiltonian parameters from a smal ...[more]

PMID: 32832350

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Project description:BackgroundMalaria is still a major global health burden, with more than 3.2 billion people in 91 countries remaining at risk of the disease. Accurately distinguishing malaria from other diseases, especially uncomplicated malaria (UM) from non-malarial infections (nMI), remains a challenge. Furthermore, the success of rapid diagnostic tests (RDTs) is threatened by Pfhrp2/3 deletions and decreased sensitivity at low parasitaemia. Analysis of haematological indices can be used to support the identification of possible malaria cases for further diagnosis, especially in travellers returning from endemic areas. As a new application for precision medicine, we aimed to evaluate machine learning (ML) approaches that can accurately classify nMI, UM, and severe malaria (SM) using haematological parameters.MethodsWe obtained haematological data from 2,207 participants collected in Ghana: nMI (n = 978), SM (n = 526), and UM (n = 703). Six different ML approaches were tested, to select the best approach. An artificial neural network (ANN) with three hidden layers was used for multi-classification of UM, SM, and uMI. Binary classifiers were developed to further identify the parameters that can distinguish UM or SM from nMI. Local interpretable model-agnostic explanations (LIME) were used to explain the binary classifiers.ResultsThe multi-classification model had greater than 85% training and testing accuracy to distinguish clinical malaria from nMI. To distinguish UM from nMI, our approach identified platelet counts, red blood cell (RBC) counts, lymphocyte counts, and percentages as the top classifiers of UM with 0.801 test accuracy (AUC = 0.866 and F1 score = 0.747). To distinguish SM from nMI, the classifier had a test accuracy of 0.96 (AUC = 0.983 and F1 score = 0.944) with mean platelet volume and mean cell volume being the unique classifiers of SM. Random forest was used to confirm the classifications, and it showed that platelet and RBC counts were the major classifiers of UM, regardless of possible confounders such as patient age and sampling location.ConclusionThe study provides proof of concept methods that classify UM and SM from nMI, showing that the ML approach is a feasible tool for clinical decision support. In the future, ML approaches could be incorporated into clinical decision-support algorithms for the diagnosis of acute febrile illness and monitoring response to acute SM treatment particularly in endemic settings.

Dataset Information

Machine Learning Magnetic Parameters from Spin Configurations.

Publications

Machine Learning Magnetic Parameters from Spin Configurations.

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