Dataset Information

Investigating Transfusion-related Sepsis Using Culture-Independent Metagenomic Sequencing.

ABSTRACT: BACKGROUND:Transfusion-related sepsis remains an important hospital infection control challenge. Investigation of septic transfusion events is often restricted by the limitations of bacterial culture in terms of time requirements and low yield in the setting of prior antibiotic administration. METHODS:In 3 gram-negative septic transfusion cases, we performed metagenomic next-generation sequencing (mNGS) of direct clinical blood specimens in addition to standard culture-based approaches utilized for infection control investigations. Pathogen detection leveraged IDSeq, a new open-access microbial bioinformatics portal. Phylogenetic analysis was performed to assess microbial genetic relatedness and understand transmission events. RESULTS:mNGS of direct clinical blood specimens afforded precision detection of pathogens responsible for each case of transfusion-related sepsis and enabled discovery of a novel Acinetobacter species in a platelet product that had become contaminated despite photochemical pathogen reduction. In each case, longitudinal assessment of pathogen burden elucidated the temporal sequence of events associated with each transfusion-transmitted infection. We found that informative data could be obtained from culture-independent mNGS of residual platelet products and leftover blood specimens that were either unsuitable or unavailable for culture or that failed to grow due to prior antibiotic administration. We additionally developed methods to enhance accuracy for detecting transfusion-associated pathogens that share taxonomic similarity to contaminants commonly found in mNGS library preparations. CONCLUSIONS:Culture-independent mNGS of blood products afforded rapid and precise assessment of pathogen identity, abundance, and genetic relatedness. Together, these challenging cases demonstrated the potential for metagenomics to advance existing methods for investigating transfusion-transmitted infections.

SUBMITTER: Crawford E

PROVIDER: S-EPMC7442849 | biostudies-literature | 2020 Aug

REPOSITORIES: biostudies-literature

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Investigating Transfusion-related Sepsis Using Culture-Independent Metagenomic Sequencing.

Crawford Emily E Kamm Jack J Miller Steve S Li Lucy M LM Caldera Saharai S Lyden Amy A Yokoe Deborah D Nichols Amy A Tran Nam K NK Barnard Sarah E SE Conner Peter M PM Nambiar Ashok A Zinter Matt S MS Moayeri Morvarid M Serpa Paula Hayakawa PH Prince Brian C BC Quan Jenai J Sit Rene R Tan Michelle M Phelps Maira M Derisi Joseph L JL Tato Cristina M CM Langelier Charles C

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 20200801 5

<h4>Background</h4>Transfusion-related sepsis remains an important hospital infection control challenge. Investigation of septic transfusion events is often restricted by the limitations of bacterial culture in terms of time requirements and low yield in the setting of prior antibiotic administration.<h4>Methods</h4>In 3 gram-negative septic transfusion cases, we performed metagenomic next-generation sequencing (mNGS) of direct clinical blood specimens in addition to standard culture-based appro ...[more]

PMID: 31563940

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Dataset Information

Investigating Transfusion-related Sepsis Using Culture-Independent Metagenomic Sequencing.

Publications

Investigating Transfusion-related Sepsis Using Culture-Independent Metagenomic Sequencing.

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