Unknown

Dataset Information

0

Premature Activation of Immune Transcription Programs in Autoimmune-Predisposed Mouse Embryonic Stem Cells and Blastocysts.


ABSTRACT: Autoimmune diabetes is a complex multifactorial disease with genetic and environmental factors playing pivotal roles. While many genes associated with the risk of diabetes have been identified to date, the mechanisms by which external triggers contribute to the genetic predisposition remain unclear. Here, we derived embryonic stem (ES) cell lines from diabetes-prone non-obese diabetic (NOD) and healthy C57BL/6 (B6) mice. While overall pluripotency markers were indistinguishable between newly derived NOD and B6 ES cells, we discovered several differentially expressed genes that normally are not expressed in ES cells. Several genes that reside in previously identified insulin-dependent diabetics (Idd) genomic regions were up-regulated in NOD ES cells. Gene set enrichment analysis showed that different groups of genes associated with immune functions are differentially expressed in NOD. Transcriptomic analysis of NOD blastocysts validated several differentially overexpressed Idd genes compared to B6. Genome-wide mapping of active histone modifications using ChIP-Seq supports active expression as the promoters and enhancers of activated genes are also marked by active histone modifications. We have also found that NOD ES cells secrete more inflammatory cytokines. Our data suggest that the known genetic predisposition of NOD to autoimmune diabetes leads to epigenetic instability of several Idd regions.

SUBMITTER: Kirak O 

PROVIDER: S-EPMC7460978 | biostudies-literature | 2020 Aug

REPOSITORIES: biostudies-literature

altmetric image

Publications

Premature Activation of Immune Transcription Programs in Autoimmune-Predisposed Mouse Embryonic Stem Cells and Blastocysts.

Kirak Oktay O   Ke Eugene E   Yang Kevin Y KY   Schwarz Anna A   Plate Lars L   Nham Amy A   Abadejos Justin R JR   Valencia Anna A   Wiseman R Luke RL   Lui Kathy O KO   Ku Manching M  

International journal of molecular sciences 20200811 16


Autoimmune diabetes is a complex multifactorial disease with genetic and environmental factors playing pivotal roles. While many genes associated with the risk of diabetes have been identified to date, the mechanisms by which external triggers contribute to the genetic predisposition remain unclear. Here, we derived embryonic stem (ES) cell lines from diabetes-prone non-obese diabetic (NOD) and healthy C57BL/6 (B6) mice. While overall pluripotency markers were indistinguishable between newly der  ...[more]

Similar Datasets

2020-08-11 | GSE155045 | GEO
2020-08-11 | GSE155044 | GEO
2020-08-11 | GSE155046 | GEO
2020-08-11 | GSE154458 | GEO
| PRJNA648339 | ENA
| PRJNA646374 | ENA
| PRJNA648343 | ENA
| PRJNA648327 | ENA
| S-EPMC5991579 | biostudies-literature
| S-EPMC2787267 | biostudies-literature