Dataset Information

Framework for the Simulation of Sensor Networks Aimed at Evaluating In Situ Calibration Algorithms.

ABSTRACT: The drastically increasing availability of low-cost sensors for environmental monitoring has fostered a large interest in the literature. One particular challenge for such devices is the fast degradation over time of the quality of their data. Therefore, the instruments require frequent calibrations. Traditionally, this operation is carried out on each sensor in dedicated laboratories. This is not economically sustainable for dense networks of low-cost sensors. An alternative that has been investigated is in situ calibration: exploiting the properties of the sensor network, the instruments are calibrated while staying in the field and preferably without any physical intervention. The literature indicates there is wide variety of in situ calibration strategies depending on the type of sensor network deployed. However, there is a lack for a systematic benchmark of calibration algorithms. In this paper, we propose the first framework for the simulation of sensor networks enabling a systematic comparison of in situ calibration strategies with reproducibility, and scalability. We showcase it on a primary test case applied to several calibration strategies for blind and static sensor networks. The performances of calibration are shown to be tightly related to the deployment of the network itself, the parameters of the algorithm and the metrics used to evaluate the results. We study the impact of the main modelling choices and adjustments of parameters in our framework and highlight their influence on the results of the calibration algorithms. We also show how our framework can be used as a tool for the design of a network of low-cost sensors.

SUBMITTER: Delaine F

PROVIDER: S-EPMC7472635 | biostudies-literature | 2020 Aug

REPOSITORIES: biostudies-literature

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Framework for the Simulation of Sensor Networks Aimed at Evaluating In Situ Calibration Algorithms.

Delaine Florentin F Lebental Bérengère B Rivano Hervé H

Sensors (Basel, Switzerland) 20200814 16

The drastically increasing availability of low-cost sensors for environmental monitoring has fostered a large interest in the literature. One particular challenge for such devices is the fast degradation over time of the quality of their data. Therefore, the instruments require frequent calibrations. Traditionally, this operation is carried out on each sensor in dedicated laboratories. This is not economically sustainable for dense networks of low-cost sensors. An alternative that has been inves ...[more]

PMID: 32824114

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Project description:BACKGROUND: Stochastic simulation can be used to illustrate the development of biological systems over time and the stochastic nature of these processes. Currently available programs for stochastic simulation, however, are limited in that they either a) do not provide the most efficient simulation algorithms and are difficult to extend, b) cannot be easily integrated into other applications or c) do not allow to monitor and intervene during the simulation process in an easy and intuitive way. Thus, in order to use stochastic simulation in innovative high-level modeling and analysis approaches more flexible tools are necessary. RESULTS: In this article, we present FERN (Framework for Evaluation of Reaction Networks), a Java framework for the efficient simulation of chemical reaction networks. FERN is subdivided into three layers for network representation, simulation and visualization of the simulation results each of which can be easily extended. It provides efficient and accurate state-of-the-art stochastic simulation algorithms for well-mixed chemical systems and a powerful observer system, which makes it possible to track and control the simulation progress on every level. To illustrate how FERN can be easily integrated into other systems biology applications, plugins to Cytoscape and CellDesigner are included. These plugins make it possible to run simulations and to observe the simulation progress in a reaction network in real-time from within the Cytoscape or CellDesigner environment. CONCLUSION: FERN addresses shortcomings of currently available stochastic simulation programs in several ways. First, it provides a broad range of efficient and accurate algorithms both for exact and approximate stochastic simulation and a simple interface for extending to new algorithms. FERN's implementations are considerably faster than the C implementations of gillespie2 or the Java implementations of ISBJava. Second, it can be used in a straightforward way both as a stand-alone program and within new systems biology applications. Finally, complex scenarios requiring intervention during the simulation progress can be modelled easily with FERN.

Dataset Information

Framework for the Simulation of Sensor Networks Aimed at Evaluating In Situ Calibration Algorithms.

Publications

Framework for the Simulation of Sensor Networks Aimed at Evaluating In Situ Calibration Algorithms.

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