Ontology highlight
ABSTRACT:
SUBMITTER: Jin JJ
PROVIDER: S-EPMC7488116 | biostudies-literature | 2020 Sep
REPOSITORIES: biostudies-literature
Jin Jian-Jun JJ Yu Wen-Bin WB Yang Jun-Bo JB Song Yu Y dePamphilis Claude W CW Yi Ting-Shuang TS Li De-Zhu DZ
Genome biology 20200910 1
GetOrganelle is a state-of-the-art toolkit to accurately assemble organelle genomes from whole genome sequencing data. It recruits organelle-associated reads using a modified "baiting and iterative mapping" approach, conducts de novo assembly, filters and disentangles the assembly graph, and produces all possible configurations of circular organelle genomes. For 50 published plant datasets, we are able to reassemble the circular plastomes from 47 datasets using GetOrganelle. GetOrganelle assembl ...[more]