Dataset Information

Identifying Early Mild Cognitive Impairment by Multi-Modality MRI-Based Deep Learning.

ABSTRACT: Mild cognitive impairment (MCI) is a clinical state with a high risk of conversion to Alzheimer's Disease (AD). Since there is no effective treatment for AD, it is extremely important to diagnose MCI as early as possible, as this makes it possible to delay its progression toward AD. However, it's challenging to identify early MCI (EMCI) because there are only mild changes in the brain structures of patients compared with a normal control (NC). To extract remarkable features for these mild changes, in this paper, a multi-modality diagnosis approach based on deep learning is presented. Firstly, we propose to use structure MRI and diffusion tensor imaging (DTI) images as the multi-modality data to identify EMCI. Then, a convolutional neural network based on transfer learning technique is developed to extract features of the multi-modality data, where an L1-norm is introduced to reduce the feature dimensionality and retrieve essential features for the identification. At last, the classifier produces 94.2% accuracy for EMCI vs. NC on an ADNI dataset. Experimental results show that multi-modality data can provide more useful information to distinguish EMCI from NC compared with single modality data, and the proposed method can improve classification performance, which is beneficial to early intervention of AD. In addition, it is found that DTI image can act as an important biomarker for EMCI from the point of view of a clinical diagnosis.

SUBMITTER: Kang L

PROVIDER: S-EPMC7498722 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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Identifying Early Mild Cognitive Impairment by Multi-Modality MRI-Based Deep Learning.

Kang Li L Jiang Jingwan J Huang Jianjun J Zhang Tijiang T

Frontiers in aging neuroscience 20200904

Mild cognitive impairment (MCI) is a clinical state with a high risk of conversion to Alzheimer's Disease (AD). Since there is no effective treatment for AD, it is extremely important to diagnose MCI as early as possible, as this makes it possible to delay its progression toward AD. However, it's challenging to identify early MCI (EMCI) because there are only mild changes in the brain structures of patients compared with a normal control (NC). To extract remarkable features for these mild change ...[more]

PMID: 33101003

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Project description:Detection and diagnosis of early and subclinical stages of Alzheimer's Disease (AD) play an essential role in the implementation of intervention and prevention strategies. Neuroimaging techniques predominantly provide insight into anatomic structure changes associated with AD. Deep learning methods have been extensively applied towards creating and evaluating models capable of differentiating between cognitively unimpaired, patients with Mild Cognitive Impairment (MCI) and AD dementia. Several published approaches apply information fusion techniques, providing ways of combining several input sources in the medical domain, which contributes to knowledge of broader and enriched quality. The aim of this paper is to fuse sociodemographic data such as age, marital status, education and gender, and genetic data (presence of an apolipoprotein E (APOE)-?4 allele) with Magnetic Resonance Imaging (MRI) scans. This enables enriched multi-modal features, that adequately represent the MRI scan visually and is adopted for creating and modeling classification systems capable of detecting amnestic MCI (aMCI). To fully utilize the potential of deep convolutional neural networks, two extra color layers denoting contrast intensified and blurred image adaptations are virtually augmented to each MRI scan, completing the Red-Green-Blue (RGB) color channels. Deep convolutional activation features (DeCAF) are extracted from the average pooling layer of the deep learning system Inception_v3. These features from the fused MRI scans are used as visual representation for the Long Short-Term Memory (LSTM) based Recurrent Neural Network (RNN) classification model. The proposed approach is evaluated on a sub-study containing 120 participants (aMCI = 61 and cognitively unimpaired = 59) of the Heinz Nixdorf Recall (HNR) Study with a baseline model accuracy of 76%. Further evaluation was conducted on the ADNI Phase 1 dataset with 624 participants (aMCI = 397 and cognitively unimpaired = 227) with a baseline model accuracy of 66.27%. Experimental results show that the proposed approach achieves 90% accuracy and 0.90 F1-Score at classification of aMCI vs. cognitively unimpaired participants on the HNR Study dataset, and 77% accuracy and 0.83 F1-Score on the ADNI dataset.

Project description:BackgroundAlzheimer's disease (AD) is a widespread neurodegenerative disease that mostly affects the elderly population. Given its prevalence, a precise and efficient stratification system based on AD symptomology that uses functional magnetic resonance imaging (MRI) has great potential in the clinical diagnosis and prognosis estimation of AD patients. It was evident that deep learning methods have performed extremely well in the field of automated stratification of AD based on MRI because of their high predicting accuracy and reliability.MethodsWe proposed a deep convolutional neural network (CNN) and iterated random forest (RF) architecture for MRI image stratification by both anatomical location and image modality using the Alzheimer's Disease Neuroimaging Initiative (ADNI) database. We employed 3 cross-sectional data sets from the ADNI to conduct our binary-stratification [AD and normal controls (NCs), or AD and mild cognitive impairment (MCI)], and multi-stratification (AD, MCI, and NCs) process using MRI. And the accuracy, recall, specificity, area under the curve of receiver operating characteristic curve (AUC), F1 and Matthew's correlation coefficient (MCC) scores to assess accuracy of auxiliary clinical diagnoses.ResultsCompared to other combinations of algorithms, our model obtained remarkable overall stratification accuracies in all different classification sets. In terms of AD vs. MCI, the mean training AUC of the 3 runs were 85.1% in 95% confidence intervals (CIs). In terms of AD vs. NC, the mean training AUC of the 3 runs was 90.6% in 95% CIs. In terms of the 3 stratifications of AD, MCI, and NC, relative precision, recall, and specificity for each category in the training test (TS) were all near 89%, while the F1 and MCC scores of both sets were 59.9% and 59.5%, respectively.ConclusionsUsing a deep CNN and iterated RF architecture, we showed that brain image stratification is a promising means for evaluating AD, and examining the underlying etiology of the disease, by applying computer and medical images to achieve the early auxiliary diagnosis of AD. However, we still have a long way to go from the discovery of image markers to clinical application.

Project description:BackgroundIn Alzheimer's Diseases (AD) research, multimodal imaging analysis can unveil complementary information from multiple imaging modalities and further our understanding of the disease. One application is to discover disease subtypes using unsupervised clustering. However, existing clustering methods are often applied to input features directly, and could suffer from the curse of dimensionality with high-dimensional multimodal data. The purpose of our study is to identify multimodal imaging-driven subtypes in Mild Cognitive Impairment (MCI) participants using a multiview learning framework based on Deep Generalized Canonical Correlation Analysis (DGCCA), to learn shared latent representation with low dimensions from 3 neuroimaging modalities.ResultsDGCCA applies non-linear transformation to input views using neural networks and is able to learn correlated embeddings with low dimensions that capture more variance than its linear counterpart, generalized CCA (GCCA). We designed experiments to compare DGCCA embeddings with single modality features and GCCA embeddings by generating 2 subtypes from each feature set using unsupervised clustering. In our validation studies, we found that amyloid PET imaging has the most discriminative features compared with structural MRI and FDG PET which DGCCA learns from but not GCCA. DGCCA subtypes show differential measures in 5 cognitive assessments, 6 brain volume measures, and conversion to AD patterns. In addition, DGCCA MCI subtypes confirmed AD genetic markers with strong signals that existing late MCI group did not identify.ConclusionOverall, DGCCA is able to learn effective low dimensional embeddings from multimodal data by learning non-linear projections. MCI subtypes generated from DGCCA embeddings are different from existing early and late MCI groups and show most similarity with those identified by amyloid PET features. In our validation studies, DGCCA subtypes show distinct patterns in cognitive measures, brain volumes, and are able to identify AD genetic markers. These findings indicate the promise of the imaging-driven subtypes and their power in revealing disease structures beyond early and late stage MCI.

Project description:BackgroundWhile there is no cure for Alzheimer's disease (AD), early diagnosis and accurate prognosis of AD may enable or encourage lifestyle changes, neurocognitive enrichment, and interventions to slow the rate of cognitive decline. The goal of our study was to develop and evaluate a novel deep learning algorithm to predict mild cognitive impairment (MCI) to AD conversion at three years after diagnosis using longitudinal and whole-brain 3D MRI.MethodsThis retrospective study consisted of 320 normal cognition (NC), 554 MCI, and 237 AD patients. Longitudinal data include T1-weighted 3D MRI obtained at initial presentation with diagnosis of MCI and at 12-month follow up. Whole-brain 3D MRI volumes were used without a priori segmentation of regional structural volumes or cortical thicknesses. MRIs of the AD and NC cohort were used to train a deep learning classification model to obtain weights to be applied via transfer learning for prediction of MCI patient conversion to AD at three years post-diagnosis. Two (zero-shot and fine tuning) transfer learning methods were evaluated. Three different convolutional neural network (CNN) architectures (sequential, residual bottleneck, and wide residual) were compared. Data were split into 75% and 25% for training and testing, respectively, with 4-fold cross validation. Prediction accuracy was evaluated using balanced accuracy. Heatmaps were generated.ResultsThe sequential convolutional approach yielded slightly better performance than the residual-based architecture, the zero-shot transfer learning approach yielded better performance than fine tuning, and CNN using longitudinal data performed better than CNN using a single timepoint MRI in predicting MCI conversion to AD. The best CNN model for predicting MCI conversion to AD at three years after diagnosis yielded a balanced accuracy of 0.793. Heatmaps of the prediction model showed regions most relevant to the network including the lateral ventricles, periventricular white matter and cortical gray matter.ConclusionsThis is the first convolutional neural network model using longitudinal and whole-brain 3D MRIs without extracting regional brain volumes or cortical thicknesses to predict future MCI to AD conversion at 3 years after diagnosis. This approach could lead to early prediction of patients who are likely to progress to AD and thus may lead to better management of the disease.

Dataset Information

Identifying Early Mild Cognitive Impairment by Multi-Modality MRI-Based Deep Learning.

Publications

Identifying Early Mild Cognitive Impairment by Multi-Modality MRI-Based Deep Learning.

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