Dataset Information

Identification of a nine-gene prognostic signature for gastric carcinoma using integrated bioinformatics analyses.

ABSTRACT: BACKGROUND:Gastric carcinoma (GC) is one of the most aggressive primary digestive cancers. It has unsatisfactory therapeutic outcomes and is difficult to diagnose early. AIM:To identify prognostic biomarkers for GC patients using comprehensive bioinformatics analyses. METHODS:Differentially expressed genes (DEGs) were screened using gene expression data from The Cancer Genome Atlas and Gene Expression Omnibus databases for GC. Overlapping DEGs were analyzed using univariate and multivariate Cox regression analyses. A risk score model was then constructed and its prognostic value was validated utilizing an independent Gene Expression Omnibus dataset (GSE15459). Multiple databases were used to analyze each gene in the risk score model. High-risk score-associated pathways and therapeutic small molecule drugs were analyzed and predicted, respectively. RESULTS:A total of 95 overlapping DEGs were found and a nine-gene signature (COL8A1, CTHRC1, COL5A2, AADAC, MAMDC2, SERPINE1, MAOA, COL1A2, and FNDC1) was constructed for the GC prognosis prediction. Receiver operating characteristic curve performance in the training dataset (The Cancer Genome Atlas-stomach adenocarcinoma) and validation dataset (GSE15459) demonstrated a robust prognostic value of the risk score model. Multiple database analyses for each gene provided evidence to further understand the nine-gene signature. Gene set enrichment analysis showed that the high-risk group was enriched in multiple cancer-related pathways. Moreover, several new small molecule drugs for potential treatment of GC were identified. CONCLUSION:The nine-gene signature-derived risk score allows to predict GC prognosis and might prove useful for guiding therapeutic strategies for GC patients.

SUBMITTER: Wu KZ

PROVIDER: S-EPMC7509999 | biostudies-literature | 2020 Sep

REPOSITORIES: biostudies-literature

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Identification of a nine-gene prognostic signature for gastric carcinoma using integrated bioinformatics analyses.

Wu Kun-Zhe KZ Xu Xiao-Hua XH Zhan Cui-Ping CP Li Jing J Jiang Jin-Lan JL

World journal of gastrointestinal oncology 20200901 9

<h4>Background</h4>Gastric carcinoma (GC) is one of the most aggressive primary digestive cancers. It has unsatisfactory therapeutic outcomes and is difficult to diagnose early.<h4>Aim</h4>To identify prognostic biomarkers for GC patients using comprehensive bioinformatics analyses.<h4>Methods</h4>Differentially expressed genes (DEGs) were screened using gene expression data from The Cancer Genome Atlas and Gene Expression Omnibus databases for GC. Overlapping DEGs were analyzed using univariate ...[more]

PMID: 33005292

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Dataset Information

Identification of a nine-gene prognostic signature for gastric carcinoma using integrated bioinformatics analyses.

Publications

Identification of a nine-gene prognostic signature for gastric carcinoma using integrated bioinformatics analyses.

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