Browse
Submit Data
Databases
API
Help

Dataset Information

29 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Characterization of the complete mitochondrial genome of Diplocheila zealandica Redtenbacher (Insecta: Coleoptera: Carabidae) from Henan province.

ABSTRACT: Diplocheila zealandica Redtenbacher is a natural enemy of aphids and larva of lepidoptera worldwide. Here, we first report the characterization of mitochondrial genome of D. zealandica in Diplocheila and its phylogenetic position. The complete mitogenome (GenBank accession number: MN995217) of D. zealandica from Henan Province consisted of a circular DNA molecule of 16,190 bp (with 21.66% G + C content), which comprised 13 protein-coding genes (PCGs), and 22 tRNA, and two rRNA genes. PCGs had typical ATN (Met) initiation codons and were terminated by typical TAN stop codons.

SUBMITTER: Fang B

PROVIDER: S-EPMC7510827 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Characterization of the complete mitochondrial genome of the maize weevil, Sitophilus zeamais (Insecta: Coleoptera: Curculionidae) from Guizhou province.

Project description:The complete mitochondrial genome of the maize weevil Sitophilus zeamais (GenBank accession number: MN905575) from Guizhou Province consists of a circular DNA molecule of 18,421 bp (with 75.69% A + T content), which is longer by 316 bp than that of the mitogenome of S. zeamais from Nigeria. The mitogenome comprises 13 protein-coding, 22 tRNA, and two rDNA genes. The protein-coding genes have typical ATN (Met) initiation codons and are terminated by typical TAN stop codons.

| S-EPMC7510821 | biostudies-literature

The complete mitochondrial genome of Pheropsophus occipitalis MacLeay, 1825 (Coleoptera: Carabidae).

Project description:Pheropsophus occipitalis MacLeay is a predatory enemy prey heavily on agricultural pests. The length of the complete mitochondrial genome of P. occipitalis was 16,800 bp with 20.4% GC content, including 41.2% A, 11.9% C, 8.4% G, 38.5% T. The genome encoded 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNA), two ribosomal RNA genes (rRNA). Phylogenetic analysis showed that P. occipitalis was clustered with Pheropsophus bimaculatus and Pheropsophus sobrinus. This study provided a scientific basis for the population genetics, phylogeny, and molecular taxonomy of P. occipitalis.

| S-EPMC8797729 | biostudies-literature

Complete mitochondrial genome sequence of Cicindela anchoralis Chevrolat, 1845 (Coleoptera: Carabidae).

Project description:The tiger beetle, Cicindela anchoralis Chevrolat, 1845 (Coleoptera: Carabidae), has been listed as an Endangered insect in South Korea. We sequenced the complete mitochondrial genome (mitogenome) of this organism (16,388 bp). The genome includes a typical set of genes (13 protein-coding genes (PCGs), 2 rRNA genes, and 22 tRNA genes) and 1 non-coding region with an arrangement identical to that observed in most insect genomes. Twelve PCGs had the typical ATN start codon, whereas ND1 had the atypical TTG codon. The AT-rich region is 1629-bp long, composed of 80.0% A + T nucleotides, and has no long repeat sequences. Phylogenetic analyses with concatenated sequences of the 13 PCGs and 2 rRNA genes, using the Bayesian inference (BI) method, placed C. anchoralis as a sister to the within-subfamilial species Habrodera capensis, with the highest nodal support presented by both BI and maximum likelihood (ML) methods. Three subfamilies represented by more than one species (Cicindelinae, Harpalinae, and Carabinae) were all determined by both BI and ML analyses to form strong monophyletic groups.

| S-EPMC7800485 | biostudies-literature

Characterization of the complete mitochondrial genome of Blaps rynchopetera Fairmaire (Insecta: Coleoptera: Tenebrionidae) from Dali.

Project description:The complete mitochondrial genome of Blaps rynchopetera Fairmaire (GenBank accession number MN267802) from Dali city consists of a circular DNA molecule of 16,766?bp (with 72.01% A?+?T content), which is longer than that of the mitogenome of B. rynchopetera from Kunming. The mitogenome comprises 13 protein-coding, 22 tRNA, and 2 rDNA genes. The protein-coding genes have typical ATN (Met) initiation codons, and are terminated by typical TAN stop codons. A phylogenetic tree generated by the neighbour-joining method showed that B. rynchopetera is closely related to Platydema sp. PLA01, which has the potential for medicinal development.

| S-EPMC7706892 | biostudies-literature

Characterization of the complete mitochondrial genome of Oryzaephilus surinamensis Linne (Insecta: Coleoptera: Silvanidae) from Xichuan.

Project description:The saw-toothed grain beetle, Oryzaephilus surinamensis Linné, is a well-known stored-product insect. Beetles were obtained from Xichuan County and the mitochondrial genome was characterized (GenBank accession number MN535903). The mitogenome consists of a circular DNA molecule of 15,941 bp, with only 27.36% GC content. It comprises 13 protein-coding, 22 tRNA, and 2 rDNA genes. The protein-coding genes have typical ATN (Met) initiation codons and are terminated by typical TAN stop codons.

| S-EPMC7707697 | biostudies-literature

Complete mitochondrial genome of Promethis valgipes valgipes (Marseul) (Insecta: Coleoptera: Tenebrionidae).

Project description:Promethis valgipes valgipes (Marseul) is one of the important fungus-eating beetle distributed in central China, Korea, and Japan. Beetles were obtained from Pizhou City and the species' mitochondrial genome was characterized (GenBank accession number MW201671). The mitogenome consists of a circular DNA molecule of 15,801 bp, with 68.51% AT content. It comprises 13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes. The PCGs have typical ATN (Met) start codons, except nad1 (TTG as start codon), and are terminated by typical TAN stop codons.

| S-EPMC7889183 | biostudies-literature

Complete mitochondrial genome of Morphostenophanes sinicus (Zhou, 2020) (Insecta: Coleoptera: Tenebrionidae).

Project description:The genus Morphostenophanes is a small arboreal group of darkling beetles that are endemic to the Oriental region. The complete mitochondrial genome of the M. sinicus population from the Manwan Town was first characterized. The mitogenome consisted of a circular DNA molecule of 15,662 bp with a 66.352% AT content. It comprises 13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes. The PCGs have a typical ATN (Met) start codon, except for nad1 (TTG as a start codon), and are terminated by typical TAN stop codons.

| S-EPMC8451664 | biostudies-literature

Complete mitochondrial genome of Morphostenophanes yunnanus (Zhou, 2020) (Insecta: Coleoptera: Tenebrionidae) and phylogenetic analysis

Project description:Abstract Morphostenophanes yunnanus (Zhou, 2020) is widely distributed from central to eastern Yunnan with distinct geographical variations in morphology. Beetles were collected in Manwan Town, and a mitochondrial genome sequence (GenBank accession number MZ298928) of this species was sequenced using the MGI-SEQ 2000 platform, assembled using NOVOPlasty v4.3.1, and characterized. The mitogenome was a circular DNA molecule of 15,690 bp with 64.710% AT content, which comprised 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and one control region. The protein-coding genes showed the typical ATN (Met) and TTG (Met) start codons, except nad1 and cox1 (TTG as start codon), and were terminated by typical TAN stop codons. The maximum-likelihood polygenetic tree was generated using protein sequences of thirteen protein-coding regions of seventeen mitogenomes with mtREV + G + F + I with 1000 replicates under the Bayesian information criterion using MEGA 11, which showed that M. yunnanus was the most closely related to M. sinicus. This study provides essential genetic and molecular data for phylogenetic analyses of the genus Morphostenophanes.

| S-EPMC9318264 | biostudies-literature

Complete mitochondrial genome of the dark mealworm Tenebrio obscurus Fabricius (Insecta: Coleoptera: Tenebrionidae).

Project description:The dark meal worm Tenehrio obscurus (Fabricius) is frequently found as a pest of stored grain, but it is an important resource insect like the yellow meal worm (Tenebrio molitor), larvae of which has high-protein content. The mitochondrial genome of T. obscurus is a circular molecule of 15,771?bp (GenBank accession number MG739327), with A?+?T bias of 72.69%. It comprises 13 protein-coding, 22 tRNA and two rDNA genes. The protein-coding genes had typical ATN (Met) as the initiation codon and were terminated by the typical stop codon TAN, except for COX2, COX3, nadh5 and nadh4. The phylogenetic tree based on maximum-likelihood method showed that the phylogenetic position of T. obscurus is closely related to T. molitor.

| S-EPMC7799911 | biostudies-literature

Complete mitochondrial genome of a cave dwelling Desmopachria (Insecta: Coleoptera: Dytiscidae) from the Eastern Amazon.

Project description:Coleoptera presents most of the cave fauna biodiversity, with several troglobite species belonging to the aquatic family Dytiscidae. However, very little is known on both genetic and genomic diversity traits of Neotropical cave beetles. Thus, here we present the complete mitochondrial genome sequence of five specimens of Desmopachria collected in a ferruginous cave from Serra dos Carajás in Parauapebas (Pará, Brazil, Eastern Amazon). Besides the general characteristics of the mitogenome of the analyzed specimens, we present their phylogenetic position within the family, considering the available genome sequences of different subfamilies within Dytiscidae.

| S-EPMC7872522 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data