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Complex study on compression of ECG signals using novel single-cycle fractal-based algorithm and SPIHT.

ABSTRACT: Compression of ECG signal is essential especially in the area of signal transmission in telemedicine. There exist many compression algorithms which are described in various details, tested on various datasets and their performance is expressed by different ways. There is a lack of standardization in this area. This study points out these drawbacks and presents new compression algorithm which is properly described, tested and objectively compared with other authors. This study serves as an example how the standardization should look like. Single-cycle fractal-based (SCyF) compression algorithm is introduced and tested on 4 different databases-CSE database, MIT-BIH arrhythmia database, High-frequency signal and Brno University of Technology ECG quality database (BUT QDB). SCyF algorithm is always compared with well-known algorithm based on wavelet transform and set partitioning in hierarchical trees in terms of efficiency (2 methods) and quality/distortion of the signal after compression (12 methods). Detail analysis of the results is provided. The results of SCyF compression algorithm reach up to avL?=?0.4460 bps and PRDN?=?2.8236%.

SUBMITTER: Nemcova A

PROVIDER: S-EPMC7519154 | biostudies-literature | 2020 Sep

REPOSITORIES: biostudies-literature

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Complex study on compression of ECG signals using novel single-cycle fractal-based algorithm and SPIHT.

Nemcova Andrea A Vitek Martin M Novakova Marie M

Scientific reports 20200925 1

Compression of ECG signal is essential especially in the area of signal transmission in telemedicine. There exist many compression algorithms which are described in various details, tested on various datasets and their performance is expressed by different ways. There is a lack of standardization in this area. This study points out these drawbacks and presents new compression algorithm which is properly described, tested and objectively compared with other authors. This study serves as an exampl ...[more]

PMID: 32978481

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Project description:IntroductionCardiovascular disease remains a significant problem in modern society. Among non-invasive techniques, the electrocardiogram (ECG) is one of the most reliable methods for detecting cardiac abnormalities. However, ECG interpretation requires expert knowledge and it is time-consuming. Developing a novel method to detect the disease early improves the quality and efficiency of medical care.MethodsThe paper presents various modern approaches for classifying cardiac diseases from ECG recordings. The first approach suggests the Poincaré representation of ECG signal and deep-learning-based image classifiers. Additionally, the raw signals were processed with the one-dimensional convolutional model while the XGBoost model was facilitated to predict based on the time-series features.ResultsThe Poincaré-based methods showed decent performance in predicting AF (atrial fibrillation) but not other types of arrhythmia. XGBoost model gave an acceptable performance in long-term data but had a long inference time due to highly-consuming calculations within the pre-processing phase. Finally, the 1D convolutional model, specifically the 1D ResNet, showed the best results in both studied CinC 2017 and CinC 2020 datasets, reaching the F1 score of 85% and 71%, respectively, and they were superior to the first-ranking solution of each challenge. The 1D models also presented high specificity. Additionally, our paper investigated efficiency metrics including power consumption and equivalent CO2 emissions, with one-dimensional models like 1D CNN and 1D ResNet being the most energy efficient. Model interpretation analysis showed that the DenseNet detected AF using heart rate variability while the 1D ResNet assessed the AF patterns in raw ECG signals.DiscussionDespite the under-performed results, the Poincaré diagrams are still worth studying further because of the accessibility and inexpensive procedure. In the 1D convolutional models, the residual connections are useful to keep the model simple but not decrease the performance. Our approach in power measurement and model interpretation helped understand the numerical complexity and mechanism behind the model decision.

Dataset Information

Complex study on compression of ECG signals using novel single-cycle fractal-based algorithm and SPIHT.

Publications

Complex study on compression of ECG signals using novel single-cycle fractal-based algorithm and SPIHT.

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