Dataset Information

Evaluation of a large-scale flow manipulation to the upper San Francisco Estuary: Response of habitat conditions for an endangered native fish.

ABSTRACT: While flow is known to be a major driver of estuarine ecosystems, targeted flow manipulations are rare because tidal systems are extremely variable in space and time, and because the necessary infrastructure is rarely available. In summer 2018 we used a unique water control structure in the San Francisco Estuary (SFE) to direct a managed flow pulse into Suisun Marsh, one of the largest contiguous tidal marshes on the west coast of the United States. The action was designed to increase habitat suitability for the endangered Delta Smelt Hypomesus transpacificus, a small osmerid fish endemic to the upper SFE. The approach was to operate the Suisun Marsh Salinity Control Gates (SMSCG) in conjunction with increased Sacramento River tributary inflow to direct an estimated 160 x 106 m3 pulse of low salinity water into Suisun Marsh during August, a critical time period for juvenile Delta Smelt rearing. Three-dimensional modeling showed that directing additional low salinity water into Suisun Marsh ("Flow Action") substantially increased the area of low salinity habitat for Delta Smelt that persisted beyond the period of SMSCG operations. Field monitoring showed that turbidity and chlorophyll were at higher levels in Suisun Marsh, representing better habitat conditions, than the upstream Sacramento River region throughout the study period. The Flow Action had no substantial effects on zooplankton abundance, nor did Suisun Marsh show enhanced levels of these prey species in comparison to the Sacramento River. Fish monitoring data suggested that small numbers of Delta Smelt colonized Suisun Marsh from the Sacramento River during the 2018 Flow Action. Comparison of the salinity effects of the Flow Action to historical catch data for Suisun Marsh further supported our hypothesis that the Flow Action would have some benefit for this rare species. Our study provides insight into both the potential use of targeted flow manipulations to support endangered fishes such as Delta Smelt, and into the general response of estuarine habitat to flow management.

SUBMITTER: Sommer T

PROVIDER: S-EPMC7529229 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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Evaluation of a large-scale flow manipulation to the upper San Francisco Estuary: Response of habitat conditions for an endangered native fish.

Sommer Ted T Hartman Rosemary R Koller Michal M Koohafkan Michael M Conrad J Louise JL MacWilliams Michael M Bever Aaron A Burdi Christina C Hennessy April A Beakes Michael M

PloS one 20201001 10

While flow is known to be a major driver of estuarine ecosystems, targeted flow manipulations are rare because tidal systems are extremely variable in space and time, and because the necessary infrastructure is rarely available. In summer 2018 we used a unique water control structure in the San Francisco Estuary (SFE) to direct a managed flow pulse into Suisun Marsh, one of the largest contiguous tidal marshes on the west coast of the United States. The action was designed to increase habitat su ...[more]

PMID: 33002006

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Project description:Understanding habitat associations is vital for conservation of at-risk marsh-endemic wildlife species, particularly those under threat from sea level rise. We modeled environmental and habitat associations of the marsh-endemic, Federally endangered salt marsh harvest mouse (Reithrodontomys raviventris, RERA) and co-occurrence with eight associated small mammal species from annual trap data, 1998-2014, in six estuarine marshes in North San Francisco Bay, California. Covariates included microhabitat metrics of elevation and vegetation species and cover; and landscape metrics of latitude-longitude, distance to anthropogenic features, and habitat patch size. The dominant cover was pickleweed (Salicornia pacifica) with 86% mean cover and 37 cm mean height, and bare ground with about 10% mean cover. We tested 38 variants of Bayesian network (BN) models to determine covariates that best account for presence of RERA and of all nine small mammal species. Best models had lowest complexity and highest classification accuracy. Among RERA presence models, three best BN models used covariates of latitude-longitude, distance to paved roads, and habitat patch size, with 0% error of false presence, 20% error of false nonpresence, and 20% overall error. The all-species presence models suggested that within the pickleweed marsh environment, RERA are mostly habitat generalists. Accounting for presence of other species did not improve prediction of RERA. Habitat attributes compared between RERA and the next most frequently captured species, California vole (Microtus californicus), suggested substantial habitat overlap, with RERA habitat being somewhat higher in marsh elevation, greater in percent cover of the dominant plant species, closer to urban areas, further from agricultural areas, and, perhaps most significant, larger in continuous size of marsh patch. Findings will inform conservation management of the marsh environment for RERA by identifying best microhabitat elements, landscape attributes, and adverse interspecific interactions.

Project description:Background and aimsSea level rise (SLR) associated with climate change is intensifying permanent submersion and salinity in salt marshes. In this scenario, hybridization between native and invasive species may result in hybrids having greater tolerance of abiotic stress factors than their parents. Thus, understanding the responses of native and invasive halophytes and their hybrids to interacting physiological stresses imposed by SLR is key to native species conservation. We analysed how salinity, inundation depth and their interaction impact the functional traits of native and invasive cordgrass species and their hybrid (genus Spartina; Poaceae).MethodsIn a mesocosm experiment, we evaluated interactive stress effects of three inundation depths (4.5, 35.5 and 55 cm) and four aqueous salinities (0.5, 10, 20 and 40 ppt) on 27 functional traits of native Spartina foliosa, invasive S. densiflora and their hybrid S. densiflora × S. foliosa from San Francisco Estuary.Key resultsThe combined effect of salinity and inundation led to synergistic effects on leaf biochemical stress indicators. Spartina foliosa behaved as a stress-tolerant species, with high leaf sodium exudation rate and glycine betaine concentrations that also increased with stress. Spartina foliosa was less sensitive to salinity than S. densiflora and the hybrid but was highly growth-limited in response to increased inundation and salinity. Spartina densiflora was fast-growing in low-stress conditions and tolerated moderate interactive stresses. The hybrid produced more biomass, rhizome reserves and tillers than its parents, even under the most stressful conditions. Transgressivity improved the hybrid's capacity to deal with flooding stress more so than its response to increasing salinity.ConclusionsBased on our observations, we predict that established populations of both native and invasive cordgrasses will experience reduced vegetative and sexual fitness in response to SLR. In particular, the combined effects of high salinity and deep inundation may decrease floret production in S. densiflora, a key trait for the spread of its invasive populations. In contrast, the hybrid likely will be able to sustain its invasiveness under SLR based on its ability to maintain growth and biomass production under stressful conditions.

Dataset Information

Evaluation of a large-scale flow manipulation to the upper San Francisco Estuary: Response of habitat conditions for an endangered native fish.

Publications

Evaluation of a large-scale flow manipulation to the upper San Francisco Estuary: Response of habitat conditions for an endangered native fish.

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