Dataset Information

Diverse Bacterial Communities From Qaidam Basin of the Qinghai-Tibet Plateau: Insights Into Variations in Bacterial Diversity Across Different Regions.

ABSTRACT: The Qaidam Basin of the Qinghai-Tibet Plateau is a cold, hyper-arid desert that presents extreme challenges to microbial communities. As little is known about variations between surface and subsurface microbial communities, high-throughput DNA sequencing was used in this study to profile bacterial communities of the soil samples collected at different depths in three regions in the Qaidam Basin. The ?-diversity indices (Chao, Shannon, and Simpson) indicated that bacterial abundance and diversity were higher in the east and the high-elevation regions compared to the west region. In general, Firmicutes was dominant in the west region, while Proteobacteria and Acidobacteria were dominant in the east and the high-elevation regions. The structure of the bacterial communities differed greatly across regions, being strongly correlated with total organic carbon (TOC) and total nitrogen (TN) content. The differences in bacterial communities between the surface and the subsurface soil samples were smaller than the differences across the regions. Network analyses of environmental factors and bacterial genera indicated significant positive correlations in all regions. Overall, our study provides evidence that TOC and TN are the best predictors of both surface and subsurface bacterial communities across the Qaidam Basin. This study concludes that the bacterial community structure is influenced by both the spatial distance and the local environment, but environmental factors are the primary drivers of bacterial spatial patterns in the Qaidam Basin.

SUBMITTER: Zhang W

PROVIDER: S-EPMC7530167 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Diverse Bacterial Communities From Qaidam Basin of the Qinghai-Tibet Plateau: Insights Into Variations in Bacterial Diversity Across Different Regions.

Zhang Wei W Bahadur Ali A Zhang Gaosen G Zhang Binglin B Wu Xiukun X Chen Tuo T Liu Guangxiu G

Frontiers in microbiology 20200918

The Qaidam Basin of the Qinghai-Tibet Plateau is a cold, hyper-arid desert that presents extreme challenges to microbial communities. As little is known about variations between surface and subsurface microbial communities, high-throughput DNA sequencing was used in this study to profile bacterial communities of the soil samples collected at different depths in three regions in the Qaidam Basin. The α-diversity indices (Chao, Shannon, and Simpson) indicated that bacterial abundance and diversity ...[more]

PMID: 33042062

Similar Datasets

Project description:Grassland is among the largest terrestrial biomes and is experiencing serious degradation, especially on the Qinghai-Tibet Plateau (QTP). However, the influences of grassland degradation on microbial communities in stream biofilms are largely unknown. Using 16S rRNA gene sequencing, we investigated the bacterial communities in stream biofilms in sub-basins with different grassland status in the Qinghai Lake watershed. Grassland status in the sub-basins was quantified using the normalized difference vegetation index (NDVI). Proteobacteria, Bacteroidetes, Cyanobacteria, and Verrucomicrobia were the dominant bacterial phyla. OTUs, 7,050, were detected in total, within which 19 were abundant taxa, and 6,922 were rare taxa. Chao 1, the number of observed OTUs, and phylogenetic diversity had positive correlations with carbon (C), nitrogen (N), and/or phosphorus (P) in biofilms per se. The variation of bacterial communities in stream biofilms was closely associated with the rate of change in NDVI, pH, conductivity, as well as C, N, P, contents and C:N ratio of the biofilms. Abundant subcommunities were more influenced by environmental variables relative to the whole community and to rare subcommunities. These results suggest that the history of grassland degradation (indicated as the rate of change in NDVI) influences bacterial communities in stream biofilms. Moreover, the bacterial community network showed high modularity with five major modules (>50 nodes) that responded differently to environmental variables. According to the module structure, only one module connector and 12 module hubs were identified, suggesting high fragmentation of the network and considerable independence of the modules. Most of the keystone taxa were rare taxa, consistent with fragmentation of the network and with adverse consequences for bacterial community integrity and function in the biofilms. By documenting the properties of bacterial communities in stream biofilms in a degrading grassland watershed, our study adds to our knowledge of the potential influences of grassland degradation on aquatic ecosystems.

Project description:Changing precipitation and temperature are principal drivers for nutrient cycling dynamics in drylands. Foliar isotopic carbon (C) and nitrogen (N) composition (δ13C and δ15N) are often used to describe the plant's water use efficiency and nitrogen use strategy in plant ecology research. However, the drivers and mechanisms under differential foliar δ13C and δ15N among plant species and communities are largely unknown for arid high-elevation regions. This study collected 462 leaf samples of ten top-dominant plant species (two or three replicates per species) across 16 sites in 2005 and 2010 to measure the community-weighted means (CWMs) of foliar δ13C and δ15N, northeastern Qaidam Basin, Qinghai-Tibetan Plateau. Our results showed that the CWM of foliar δ15N was higher in 2005 than in 2010 and was lower in the warm-dry season (July and August) than the cool-wet one (June and September) in 2010. Similarly, the CWM of foliar δ13C was higher in 2005 than in 2010, but no difference between warm-dry and cool-wet seasons in 2010. C4 plants have higher δ13C and generally grow faster than C3 species under warm-wet weathers. This might be why the CWM of foliar δ13C was high, while the CWM of foliar δ15N was low in the wet sampling year (2010). The general linear mixed models revealed that soil moisture was the most critical driver for the CWM of foliar δ15N, which explained 42.1% of the variance alone. However, the total soluble salt content was the crucial factor for the CWM of foliar δ13C, being responsible for 29.7% of the variance. Growing season temperature (GST) was the second most vital factor and explained 28.0% and 21.9% of the variance in the CWMs of foliar δ15N and δ13C. Meanwhile, remarkable differences in the CWMs of foliar δ15N and δ13C were also found at the species level. Specifically, Kalidium gracile and Salsola abrotanoides have higher foliar δ15N, while Ephedra sinica and Tamarix chinensis have lower foliar δ15N than other species. The foliar δ13C of Calligonum Kozlov and H. ammodendron was the highest among the ten species. Except for the foliar δ13C of E. sinica was higher than Ceratoide latens between the two sampling years or between the cool-wet and warm-dry seasons, no significant difference in foliar δ13C was found for other species. Overall, the CWMs of foliar δ15N and δ13C dynamics were affected by soil properties, wet-dry climate change, and species identity in high-elevation deserts on the Qinghai Tibetan Plateau.

Project description:Understanding the processes that influence the structure of biotic communities is one of the major ecological topics, and both stochastic and deterministic processes are expected to be at work simultaneously in most communities. Here, we investigated the vertical distribution patterns of bacterial communities in a 10-m-long soil core taken within permafrost of the Qinghai-Tibet Plateau. To get a better understanding of the forces that govern these patterns, we examined the diversity and structure of bacterial communities, and the change in community composition along the vertical distance (spatial turnover) from both taxonomic and phylogenetic perspectives. Measures of taxonomic and phylogenetic beta diversity revealed that bacterial community composition changed continuously along the soil core, and showed a vertical distance-decay relationship. Multiple stepwise regression analysis suggested that bacterial alpha diversity and phylogenetic structure were strongly correlated with soil conductivity and pH but weakly correlated with depth. There was evidence that deterministic and stochastic processes collectively drived bacterial vertically-structured pattern. Bacterial communities in five soil horizons (two originated from the active layer and three from permafrost) of the permafrost core were phylogenetically random, indicator of stochastic processes. However, we found a stronger effect of deterministic processes related to soil pH, conductivity, and organic carbon content that were structuring the bacterial communities. We therefore conclude that the vertical distribution of bacterial communities was governed primarily by deterministic ecological selection, although stochastic processes were also at work. Furthermore, the strong impact of environmental conditions (for example, soil physicochemical parameters and seasonal freeze-thaw cycles) on these communities underlines the sensitivity of permafrost microorganisms to climate change and potentially subsequent permafrost thaw.

Dataset Information

Diverse Bacterial Communities From Qaidam Basin of the Qinghai-Tibet Plateau: Insights Into Variations in Bacterial Diversity Across Different Regions.

Publications

Diverse Bacterial Communities From Qaidam Basin of the Qinghai-Tibet Plateau: Insights Into Variations in Bacterial Diversity Across Different Regions.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets