Independent association of meteorological characteristics with initial spread of Covid-19 in India.
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ABSTRACT:
SUBMITTER: Kulkarni H
PROVIDER: S-EPMC7566664 | biostudies-literature |
REPOSITORIES: biostudies-literature
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Project description:On March 2, 2020, the first Coronavirus Disease (COVID-19) case was reported in Jakarta, Indonesia. One and a half months later (15/05/2020), the cumulative number of infection cases was 16,496, with a total of 1076 mortalities. This study investigates the possible role of weather in the early cases of COVID-19 in six selected cities in Indonesia. Daily temperature and relative humidity data from weather stations nearby in each city were collected from March 3 to April 30, 2020, corresponding with COVID-19 incidence. Correlation tests and regression analysis were performed to examine the association of those two data series. Moreover, we analyzed the distribution of COVID-19 referring the weather data to estimate the effective range of weather data supporting the COVID-19 incidence. Our result reveals that weather data is generally associated with COVID-19 incidence. The daily average temperature (T-ave) and relative humidity (RH) present significant positive and negative correlation with COVID-19 data, respectively. However, the correlation coefficients are weak, with the strongest correlations found at the 5-day lag, i.e., 0.37 (− 0.41) for T-ave (RH). The regression analysis consistently confirmed this relation. The distribution analysis reveals that most COVID-19 cases in Indonesia occurred in the daily temperature range of 25–31 °C and relative humidity of 74–92%. Our findings suggest that COVID-19 incidence in Indonesia has a weak association with weather conditions. Therefore, non-meteorological factors seem to play a more prominent role and should be given greater consideration in preventing the spread of COVID-19. Graphic abstract Supplementary Information The online version contains supplementary material available at 10.1007/s42398-021-00202-9.
| S-EPMC8403470 | biostudies-literature
Project description:ObjectiveThe Coronavirus Disease 2019 (COVID-19) has currently ravaged through the world, resulting in over thirteen million confirmed cases and over five hundred thousand deaths, a complete change in daily life as we know it, worldwide lockdowns, travel restrictions, as well as heightened hygiene measures and physical distancing. Being able to analyse and predict the spread of this epidemic-causing disease is hence of utmost importance now, especially as it would help in the reasoning behind important decisions drastically affecting countries and their people, as well as in ensuring efficient resource and utility management. However, the needs of the people and specific conditions of the spread are varying widely from country to country. Hence, this article has two fold objectives: (i) conduct an in-depth statistical analysis of COVID-19 affected patients in India, (ii) propose a mathematical model for the prediction of spread of COVID-19 cases in India.Materials and methodThere has been limited research in modeling and predicting the spread of COVID-19 in India, owing both to the ongoing nature of the pandemic and limited availability of data. Currently famous SIR and non-SIR based Gauss-error-function and Monte Carlo simulation models do not perform well in the context of COVID-19 spread in India. We propose a 'change-factor' or 'rate-of-change' based mathematical model to predict the spread of the pandemic in India, with data drawn from hundreds of sources.ResultsAverage age of affected patients was found to be 38.54 years, with 66.76% males, and 33.24% females. Most patients were in the age range of 18-40 years. Optimal parameter values of the prediction model are identified (α = 1.35, N = 3 and T = 10) by extensive experiments. Over the entire course of time since the outbreak started in India, the model has been 90.36% accurate in predicting the total number of cases the next day, correctly predicting the range in 150 out of the 166 days looked at.ConclusionThe proposed system showed an accuracy of 90.36% for prediction since the first COVID-19 case in India, and 96.67% accuracy over the month of April. Predicted number of cases for the next day is found to be a function of the numbers over the last 3 days, but with an 'increase' factor influenced by the last 10 days. It is noticed that males are affected more than females. It is also noticed that in India, the number of people in each age bucket is steadily decreasing, with the largest number of adults infected being the youngest ones-a departure from the world trend. The model is self-correcting as it improves its predictions every day, by incorporating the previous day's data into the trend-line for the following days. This model can thus be used dynamically not only to predict the spread of COVID-19 in India, but also to check the effect of various government measures in a short span of time after they are implemented.
| S-EPMC7445130 | biostudies-literature
Project description:BackgroundIndia reported first laboratory-confirmed case of coronavirus disease 2019 (COVID-19) on 30 January from Kerala. Media surveillance is useful to capture unstructured information about outbreaks. We established media surveillance and described the characteristics of the COVID-19 cases, clusters, deaths by time, place, and person during January-March 2020 in India.MethodsThe media surveillance team of ICMR-National Institute of Epidemiology abstracted data from public domains of India's Central and State health ministries, online news and social media platforms for the period of January 31 to March 26, 2020. We collected data on person (socio-demographics, circumstances of travel/contact, clinical and laboratory), time (date/period of reported exposures; laboratory confirmation and death) and place (location). We drew epidemic curve, described frequencies of cases by age and gender. We described available details for identified clusters.ResultsAs of March 26, 2020, India reported 694 (Foreigners = 45, 6%) confirmed COVID-19 cases (Attack rate = 0.5 per million population) and 17 deaths (Fatality = 2.5%) from 21 States and 6 Union Territories. The cases were higher among 20-59 years of age (60 of 85) and male gender (65 of 107). Median age at death was 68 years (Range: 38-85 years). We identified 13 clusters with a total of 63 cases and four deaths among the first 200 cases.ConclusionSurveillance of media sources was useful in characterizing the epidemic in the early phase. Hence, media surveillance should be integrated in the routine surveillance systems to map the events specially in context of new disease outbreaks.
| S-EPMC7647904 | biostudies-literature
Project description:High throughput sequencing is performed on mRNA isolated from whole blood of adult Covid-19 patients, bacterial coinfection with Covid-19 and healthy controls in a South Indian cohort. Samples were collected from individuals at the time of hospitalization or visit to clinic. The Covid-19 samples are categorized by severeity.
2022-02-22 | GSE196822 | GEO
Project description:The novel coronavirus disease 2019 (COVID-19) has spread globally and the meteorological factors vary greatly across the world. Understanding the effect of meteorological factors and control strategies on COVID-19 transmission is critical to contain the epidemic. Using individual-level data in mainland China, Hong Kong, and Singapore, and the number of confirmed cases in other regions, we explore the effect of temperature, relative humidity, and control measures on the spread of COVID-19. We find that high temperature mitigates the transmission of the disease. High relative humidity promotes COVID-19 transmission when temperature is low, but tends to reduce transmission when temperature is high. Implementing classical control measures can dramatically slow the spread of the disease. However, due to the occurrence of pre-symptomatic infections, the effect of the measures to shorten treatment time is markedly reduced and the importance of contact quarantine and social distancing increases.
| S-EPMC7358146 | biostudies-literature
Project description:Evidence of the association of built environment (BE) attributes with the spread of COVID-19 remains limited. As an additional effort, this study regresses a ratio of accumulative confirmed infection cases at the city level in China on both inter-city and intra-city BE attributes. A mixed geographically weighted regression model was estimated to accommodate both local and global effects of BE attributes. It is found that spatial clusters are mostly related to low infections in 28.63 % of the cities. The density of point of interests around railway stations, travel time by public transport to activity centers, and the number of flights from Hubei Province are associated with the spread. On average, the most influential BE attribute is the number of trains from Hubei Province. Higher infection ratios are associated with higher values of between-ness centrality in 70.98 % of the cities. In 79.22 % of the cities, the percentage of the aging population shows a negative association. A positive association of the population density in built-up areas is found in 68.75 % of county-level cities. It is concluded that the countermeasures in China could have well reflected spatial heterogeneities, and the BE could be further improved to mitigate the impacts of future pandemics.
| S-EPMC7857111 | biostudies-literature
Project description:Meteorological parameters are the critical factors affecting the transmission of infectious diseases such as Middle East Respiratory Syndrome (MERS), Severe Acute Respiratory Syndrome (SARS), and influenza. Consequently, infectious disease incidence rates are likely to be influenced by the weather change. This study investigates the role of Singapore's hot tropical weather in COVID-19 transmission by exploring the association between meteorological parameters and the COVID-19 pandemic cases in Singapore. This study uses the secondary data of COVID-19 daily cases from the webpage of Ministry of Health (MOH), Singapore. Spearman and Kendall rank correlation tests were used to investigate the correlation between COVID-19 and meteorological parameters. Temperature, dew point, relative humidity, absolute humidity, and water vapor showed positive significant correlation with COVID-19 pandemic. These results will help the epidemiologists to understand the behavior of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) virus against meteorological variables. This study finding would be also a useful supplement to help the local healthcare policymakers, Center for Disease Control (CDC), and the World Health Organization (WHO) in the process of strategy making to combat COVID-19 in Singapore.
| S-EPMC7289735 | biostudies-literature
Project description:Meteorological factors may influence coronavirus disease 2019 (COVID-19) transmission. Due to the small number of time series studies, the relative importance of seasonality and meteorological factors is still being debated. From March 2020 to April 2021, we evaluated the impact of meteorological factors on the transmission of COVID-19 in Chennai, India. Understanding how the COVID-19 pandemic spreads over the year is critical to developing public health strategies. Correlation models were used to examine the influence of meteorological factors on the transmission of COVID-19. The results revealed seasonal variations in the number of COVID-19-infected people. COVID-19 transmission was greatly aggravated by temperature, wind speed, nitric oxide (NO) and barometric pressure (BP) during summer seasons, whereas wind speed and BP aggravated COVID-19 transmission during rainy seasons. Furthermore, PM 2.5, NO and BP aggravated COVID-19 transmission during winter seasons. However, their relationships fluctuated seasonally. Our research shows that seasonal influences must be considered when developing effective interventions.
| S-EPMC9414974 | biostudies-literature
Project description:This research focuses on the impacts of different meteorological parameters (temperature, humidity, rainfall, and evapotranspiration) on the transmission of Covid-19 in the administrative regions and provinces of Pakistan, i.e., Azad Jammu and Kashmir, Gilgit Baltistan, Khyber Pakhtunkhwa, Islamabad, Punjab, Sindh, and Balochistan from June 10, 2020, to August 31, 2021. This study analyzes the relation between Covid-19-confirmed cases and the meteorological parameters with the help of the autoregressive distributed lag model. In this research, additional tools (t-statistics, f-statistics, and time series analysis) are used for the motive of examining the linear relationship, the productivity of the model, and for the significant association between dependent and independent variables, lnccc and lnevp, lnhum, lnrain, lntemp, respectively. Values of t-statistics and f-statistics reveal that variables have a connection and individual significance for the model exist. Time series display that the Covid-19 spread increased from June 10, 2020, to August 31, 2021, in Pakistan. Temperature positively influenced the Covid-19-confirmed cases in all provinces of Pakistan in the long run. Evapotranspiration and rainfall influenced positively, while specific humidity influenced negatively on the confirmed Covid-19 cases in Azad Jammu Kashmir, Khyber Pakhtunkhwa, and Punjab. Specific humidity had a positive impact, while evapotranspiration and rainfall had the negative impact on the Covid-19-confirmed cases in Sindh and Balochistan. Evapotranspiration and specific humidity influenced positively, while rainfall influenced the Covid-19-confirmed cases negatively in Gilgit Baltistan. Evapotranspiration influenced positively, while specific humidity and rainfall influenced negatively on the Covid-19-confirmed cases in Islamabad. Supplementary Information The online version contains supplementary material available at 10.1007/s13762-023-04997-4.
| S-EPMC10249560 | biostudies-literature
Project description:We conduct an adaptive randomized controlled trial to evaluate the impact of a SMS-based information campaign on the adoption of social distancing and handwashing in rural Bihar, India, six months into the COVID-19 pandemic. We test 10 arms that vary in delivery timing and message framing, changing content to highlight gains or losses for either one's own family or community. We identify the optimal treatment separately for each targeted behavior by adaptively allocating shares across arms over 10 experimental rounds using exploration sampling. Based on phone surveys with nearly 4,000 households and using several elicitation methods, we do not find evidence of impact on knowledge or adoption of preventive health behavior, and our confidence intervals cannot rule out positive effects as large as 5.5 percentage points, or 16%. Our results suggest that SMS-based information campaigns may have limited efficacy after the initial phase of a pandemic.
| S-EPMC8464082 | biostudies-literature