Dataset Information

Application of Quantum-Markov Open System Models to Human Cognition and Decision.

ABSTRACT: Markov processes, such as random walk models, have been successfully used by cognitive and neural scientists to model human choice behavior and decision time for over 50 years. Recently, quantum walk models have been introduced as an alternative way to model the dynamics of human choice and confidence across time. Empirical evidence points to the need for both types of processes, and open system models provide a way to incorporate them both into a single process. However, some of the constraints required by open system models present challenges for achieving this goal. The purpose of this article is to address these challenges and formulate open system models that have good potential to make important advancements in cognitive science.

SUBMITTER: Busemeyer J

PROVIDER: S-EPMC7597313 | biostudies-literature | 2020 Sep

REPOSITORIES: biostudies-literature

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Application of Quantum-Markov Open System Models to Human Cognition and Decision.

Busemeyer Jerome J Zhang Qizi Q Balakrishnan S N SN Wang Zheng Z

Entropy (Basel, Switzerland) 20200904 9

Markov processes, such as random walk models, have been successfully used by cognitive and neural scientists to model human choice behavior and decision time for over 50 years. Recently, quantum walk models have been introduced as an alternative way to model the dynamics of human choice and confidence across time. Empirical evidence points to the need for both types of processes, and open system models provide a way to incorporate them both into a single process. However, some of the constraints ...[more]

PMID: 33286759

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Project description:Background:Tackling behavioural questions often requires identifying points in space and time where animals make decisions and linking these to environmental variables. State-space modeling is useful for analysing movement trajectories, particularly with hidden Markov models (HMM). Yet importantly, the ontogeny of underlying (unobservable) behavioural states revealed by the HMMs has rarely been verified in the field. Methods:Using hidden Markov models of individual movement from animal location, biotelemetry, and environmental data, we explored multistate behaviour and the effect of associated intrinsic and extrinsic drivers across life stages. We also decomposed the activity budgets of different movement states at two general and caching phases. The latter - defined as the period following a kill which likely involves the caching of uneaten prey - was subsequently confirmed by field inspections. We applied this method to GPS relocation data of a caching predator, Persian leopard Panthera pardus saxicolor in northeastern Iran. Results:Multistate modeling provided strong evidence for an effect of life stage on the behavioural states and their associated time budget. Although environmental covariates (ambient temperature and diel period) and ecological outcomes (predation) affected behavioural states in non-resident leopards, the response in resident leopards was not clear, except that temporal patterns were consistent with a crepuscular and nocturnal movement pattern. Resident leopards adopt an energetically more costly mobile behaviour for most of their time while non-residents shift their behavioural states from high energetic expenditure states to energetically less costly encamped behaviour for most of their time, which is likely to be a risk avoidance strategy against conspecifics or humans. Conclusions:This study demonstrates that plasticity in predator behaviour depending on life stage may tackle a trade-off between successful predation and avoiding the risks associated with conspecifics, human presence and maintaining home range. Range residency in territorial predators is energetically demanding and can outweigh the predator's response to intrinsic and extrinsic variables such as thermoregulation or foraging needs. Our approach provides an insight into spatial behavior and decision making of leopards, and other large felids in rugged landscapes through the application of the HMMs in movement ecology.

Project description:MotivationMultiply correlated datasets have become increasingly common in genome-wide location analysis of regulatory proteins and epigenetic modifications. Their correlation can be directly incorporated into a statistical model to capture underlying biological interactions, but such modeling quickly becomes computationally intractable.ResultsWe present sparsely correlated hidden Markov models (scHMM), a novel method for performing simultaneous hidden Markov model (HMM) inference for multiple genomic datasets. In scHMM, a single HMM is assumed for each series, but the transition probability in each series depends on not only its own hidden states but also the hidden states of other related series. For each series, scHMM uses penalized regression to select a subset of the other data series and estimate their effects on the odds of each transition in the given series. Following this, hidden states are inferred using a standard forward-backward algorithm, with the transition probabilities adjusted by the model at each position, which helps retain the order of computation close to fitting independent HMMs (iHMM). Hence, scHMM is a collection of inter-dependent non-homogeneous HMMs, capable of giving a close approximation to a fully multivariate HMM fit. A simulation study shows that scHMM achieves comparable sensitivity to the multivariate HMM fit at a much lower computational cost. The method was demonstrated in the joint analysis of 39 histone modifications, CTCF and RNA polymerase II in human CD4+ T cells. scHMM reported fewer high-confidence regions than iHMM in this dataset, but scHMM could recover previously characterized histone modifications in relevant genomic regions better than iHMM. In addition, the resulting combinatorial patterns from scHMM could be better mapped to the 51 states reported by the multivariate HMM method of Ernst and Kellis.AvailabilityThe scHMM package can be freely downloaded from http://sourceforge.net/p/schmm/ and is recommended for use in a linux environment.

Dataset Information

Application of Quantum-Markov Open System Models to Human Cognition and Decision.

Publications

Application of Quantum-Markov Open System Models to Human Cognition and Decision.

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