Dataset Information

Explainable machine learning for materials discovery: predicting the potentially formable Nd-Fe-B crystal structures and extracting the structure-stability relationship.

ABSTRACT: New Nd-Fe-B crystal structures can be formed via the elemental substitution of LA-T-X host structures, including lanthanides (LA), transition metals (T) and light elements, X = B, C, N and O. The 5967 samples of ternary LA-T-X materials that are collected are then used as the host structures. For each host crystal structure, a substituted crystal structure is created by substituting all lanthanide sites with Nd, all transition metal sites with Fe and all light-element sites with B. High-throughput first-principles calculations are applied to evaluate the phase stability of the newly created crystal structures, and 20 of them are found to be potentially formable. A data-driven approach based on supervised and unsupervised learning techniques is applied to estimate the stability and analyze the structure-stability relationship of the newly created Nd-Fe-B crystal structures. For predicting the stability for the newly created Nd-Fe-B structures, three supervised learning models: kernel ridge regression, logistic classification and decision tree model, are learned from the LA-T-X host crystal structures; the models achieved maximum accuracy and recall scores of 70.4 and 68.7%, respectively. On the other hand, our proposed unsupervised learning model based on the integration of descriptor-relevance analysis and a Gaussian mixture model achieved an accuracy and recall score of 72.9 and 82.1%, respectively, which are significantly better than those of the supervised models. While capturing and interpreting the structure-stability relationship of the Nd-Fe-B crystal structures, the unsupervised learning model indicates that the average atomic coordination number and coordination number of the Fe sites are the most important factors in determining the phase stability of the new substituted Nd-Fe-B crystal structures.

SUBMITTER: Pham TL

PROVIDER: S-EPMC7642775 | biostudies-literature | 2020 Nov

REPOSITORIES: biostudies-literature

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Explainable machine learning for materials discovery: predicting the potentially formable Nd-Fe-B crystal structures and extracting the structure-stability relationship.

Pham Tien-Lam TL Nguyen Duong-Nguyen DN Ha Minh-Quyet MQ Kino Hiori H Miyake Takashi T Dam Hieu-Chi HC

IUCrJ 20200923 Pt 6

New Nd-Fe-B crystal structures can be formed via the elemental substitution of LA-T-X host structures, including lanthanides (LA), transition metals (T) and light elements, X = B, C, N and O. The 5967 samples of ternary LA-T-X materials that are collected are then used as the host structures. For each host crystal structure, a substituted crystal structure is created by substituting all lanthanide sites with Nd, all transition metal ...[more]

PMID: 33209317

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Project description:BACKGROUND:Supervised machine learning (ML) is being featured in the health care literature with study results frequently reported using metrics such as accuracy, sensitivity, specificity, recall, or F1 score. Although each metric provides a different perspective on the performance, they remain to be overall measures for the whole sample, discounting the uniqueness of each case or patient. Intuitively, we know that all cases are not equal, but the present evaluative approaches do not take case difficulty into account. OBJECTIVE:A more case-based, comprehensive approach is warranted to assess supervised ML outcomes and forms the rationale for this study. This study aims to demonstrate how the item response theory (IRT) can be used to stratify the data based on how difficult each case is to classify, independent of the outcome measure of interest (eg, accuracy). This stratification allows the evaluation of ML classifiers to take the form of a distribution rather than a single scalar value. METHODS:Two large, public intensive care unit data sets, Medical Information Mart for Intensive Care III and electronic intensive care unit, were used to showcase this method in predicting mortality. For each data set, a balanced sample (n=8078 and n=21,940, respectively) and an imbalanced sample (n=12,117 and n=32,910, respectively) were drawn. A 2-parameter logistic model was used to provide scores for each case. Several ML algorithms were used in the demonstration to classify cases based on their health-related features: logistic regression, linear discriminant analysis, K-nearest neighbors, decision tree, naive Bayes, and a neural network. Generalized linear mixed model analyses were used to assess the effects of case difficulty strata, ML algorithm, and the interaction between them in predicting accuracy. RESULTS:The results showed significant effects (P<.001) for case difficulty strata, ML algorithm, and their interaction in predicting accuracy and illustrated that all classifiers performed better with easier-to-classify cases and that overall the neural network performed best. Significant interactions suggest that cases that fall in the most arduous strata should be handled by logistic regression, linear discriminant analysis, decision tree, or neural network but not by naive Bayes or K-nearest neighbors. Conventional metrics for ML classification have been reported for methodological comparison. CONCLUSIONS:This demonstration shows that using the IRT is a viable method for understanding the data that are provided to ML algorithms, independent of outcome measures, and highlights how well classifiers differentiate cases of varying difficulty. This method explains which features are indicative of healthy states and why. It enables end users to tailor the classifier that is appropriate to the difficulty level of the patient for personalized medicine.

Dataset Information

Explainable machine learning for materials discovery: predicting the potentially formable Nd-Fe-B crystal structures and extracting the structure-stability relationship.

Publications

Explainable machine learning for materials discovery: predicting the potentially formable Nd-Fe-B crystal structures and extracting the structure-stability relationship.

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