Dataset Information

Identification of Candidate Genes Involved in Fruit Ripening and Crispness Retention Through Transcriptome Analyses of a 'Honeycrisp' Population.

ABSTRACT: Crispness retention is a postharvest trait that fruit of the 'Honeycrisp' apple and some of its progeny possess. To investigate the molecular mechanisms of crispness retention, progeny individuals derived from a 'Honeycrisp' × MN1764 population with fruit that either retain crispness (named "Retain"), lose crispness (named "Lose"), or that are not crisp at harvest (named "Non-crisp") were selected for transcriptomic comparisons. Differentially expressed genes (DEGs) were identified using RNA-Seq, and the expression levels of the DEGs were validated using nCounter®. Functional annotation of the DEGs revealed distinct ripening behaviors between fruit of the "Retain" and "Non-crisp" individuals, characterized by opposing expression patterns of auxin- and ethylene-related genes. However, both types of genes were highly expressed in the fruit of "Lose" individuals and 'Honeycrisp', which led to the potential involvements of genes encoding auxin-conjugating enzyme (GH3), ubiquitin ligase (ETO), and jasmonate O-methyltransferase (JMT) in regulating fruit ripening. Cell wall-related genes also differentiated the phenotypic groups; greater numbers of cell wall synthesis genes were highly expressed in fruit of the "Retain" individuals and 'Honeycrisp' when compared with "Non-crisp" individuals and MN1764. On the other hand, the phenotypic differences between fruit of the "Retain" and "Lose" individuals could be attributed to the functioning of fewer cell wall-modifying genes. A cell wall-modifying gene, MdXTH, was consistently identified as differentially expressed in those fruit over two years in this study, so is a major candidate for crispness retention.

SUBMITTER: Chang HY

PROVIDER: S-EPMC7650588 | biostudies-literature | 2020 Oct

REPOSITORIES: biostudies-literature

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Identification of Candidate Genes Involved in Fruit Ripening and Crispness Retention Through Transcriptome Analyses of a 'Honeycrisp' Population.

Chang Hsueh-Yuan HY Tong Cindy B S CBS

Plants (Basel, Switzerland) 20201010 10

Crispness retention is a postharvest trait that fruit of the 'Honeycrisp' apple and some of its progeny possess. To investigate the molecular mechanisms of crispness retention, progeny individuals derived from a 'Honeycrisp' × MN1764 population with fruit that either retain crispness (named "Retain"), lose crispness (named "Lose"), or that are not crisp at harvest (named "Non-crisp") were selected for transcriptomic comparisons. Differentially expressed genes (DEGs) were identified using RNA-Seq ...[more]

PMID: 33050481

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Dataset Information

Identification of Candidate Genes Involved in Fruit Ripening and Crispness Retention Through Transcriptome Analyses of a 'Honeycrisp' Population.

Publications

Identification of Candidate Genes Involved in Fruit Ripening and Crispness Retention Through Transcriptome Analyses of a 'Honeycrisp' Population.

Similar Datasets

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