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An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis.

ABSTRACT: The domestication of Indonesian cattle was investigated through a study of their genetic diversity, up to the genome level. Little documentation exists regarding the history of domestication of Indonesian cattle and questions remain despite a growing body of molecular evidence. In this study, we genotyped seven Indonesian cattle breeds using an Illumina BovineSNP50 Bead Chip to provide insight into their domestication and demographic history in a worldwide population context. Our analyses indicated the presence of hybrid cattle, with Bos javanicus and Bos indicus ancestries being most prevalent, as well as purebred cattle. We revealed that all the breeds were interconnected through several migration events. However, their demographic status varied widely. Although almost all the Indonesian cattle had an effective population size higher than the minimum level required to ensure breed fitness, efforts are still needed to maintain their genetic variability and purity.

SUBMITTER: Sudrajad P

PROVIDER: S-EPMC7654832 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis.

Sudrajad Pita P Subiharta Subiharta S Adinata Yudi Y Lathifah Af'idatul A Lee Jun Heon JH Lenstra Johannes A JA Lee Seung Hwan SH

PloS one 20201110 11

The domestication of Indonesian cattle was investigated through a study of their genetic diversity, up to the genome level. Little documentation exists regarding the history of domestication of Indonesian cattle and questions remain despite a growing body of molecular evidence. In this study, we genotyped seven Indonesian cattle breeds using an Illumina BovineSNP50 Bead Chip to provide insight into their domestication and demographic history in a worldwide population context. Our analyses indica ...[more]

PMID: 33170846

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An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis.

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An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis.

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