Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Characterization of the complete chloroplast genome of the ornamental plant Osmanthus cooperi.

ABSTRACT: Osmanthus cooperi is an evergreen ornamental plant belonging to the olive family. In this study, its complete chloroplast genome was assembled from the whole genome Illumina sequencing data. The circular genome is 155,262?bp long, and comprises a pair of inverted repeat regions (IRs, 25,685?bp each), a large single-copy region (LSC, 86,525?bp), and a small single-copy region (SSC, 17,367?bp). It encodes 132 genes, including 8 rRNA genes, 36 tRNAs genes, and 88 protein-coding genes. The GC content of O. cooperi cp genome is 37.8%. Phylogenetic analysis indicates that O. cooperi is close to O. fragrans in Oleaceae.

SUBMITTER: Wang X

PROVIDER: S-EPMC7687408 | biostudies-literature | 2019 Jul

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Characterization of the complete chloroplast genome of the ornamental plant Osmanthus cooperi.

Wang Xiaofei X Cai Fuyue F Zhang Cheng C Zhang Min M Li Yongfu Y Duan Yifan Y

Mitochondrial DNA. Part B, Resources 20190711 2

Osmanthus cooperi is an evergreen ornamental plant belonging to the olive family. In this study, its complete chloroplast genome was assembled from the whole genome Illumina sequencing data. The circular genome is 155,262 bp long, and comprises a pair of inverted repeat regions (IRs, 25,685 bp each), a large single-copy region (LSC, 86,525 bp), and a small single-copy region (SSC, 17,367 bp). It encodes 132 genes, including 8 rRNA genes, 36 tRNAs genes, and 88 protein-coding genes. The GC ...[more]

PMID: 33365521

Similar Datasets

Characterization of the complete chloroplast genome of ornamental plant, Bougainvillea peruviana (Nyctaginaceae).

Project description:Bougainvillea peruviana is a widely domesticated ornamental plant species. However, studies on B. peruviana are limited. In this study, we reported the complete chloroplast (cp) genome of B. peruviana. The cp genome is 154,465 bp in length, containing a large single-copy (LSC) of 85,563 bp and a small single-copy (SSC) of 18,050 bp, which are separated by a pair of inverted repeats (IRs) of 25,426 bp, each. A total of 132 genes, including 86 protein-coding genes, 38 tRNA genes, and eight rRNA genes, were predicted. The overall GC content for the cp genome is 36.5%. The maximum-likelihood tree constructed based on cp genome sequences showed that B. peruviana is placed under Nyctaginaceae and is diverged before Bougainvillea glabra and Bougainvillea spectabilis under strong bootstrap support.

| S-EPMC7782202 | biostudies-literature

Characterization of the complete chloroplast genome of Senna bicapsularis (Leguminosae), an ornamental plant.

Project description:Senna bicapsularis is an important flowering, ornamental plant. The extracts showed antioxidant activity and antibacterial properties. In addition, S. bicapsularis can be used as a model woody plants. In the present study, the complete chloroplast genome was sequenced. The result showed that the length of circular chloroplast genome was 162,744 bp, containing a large single-copy region of 91,176 bp, a small single-copy region of 18,264 bp, and two inverted repeat regions of 26,652 bp. The chloroplast genome contained 128 genes, including 83 protein-coding, eight rRNA, and 37 tRNA genes. Phylogenetic tree analysis showed that S. bicapsularis has closely relationship with Senna occidentalis, Senna tora and Senna siamea.

| S-EPMC7782358 | biostudies-literature

Characterization of the complete chloroplast genome of an endangered ornamental and medicinal plant Lilium pumilum.

Project description:Lilium pumilum DC. is a useful plant species not only for its showy flowers but also for its edible and medicinal values. Here we report on the complete chloroplast genome sequence of L. pumilum. The chloroplast genome is 152,573 bp in size and includes two inverted repeat regions of 52,984 bp, which is separated by a large single-copy region of 82,009 bp and a small single copy region of 17,580 bp. A total of 130 genes were predicted, including 38 tRNA, 8 rRNA, and 84 protein-coding genes. Phylogenetic analysis placed L. pumilum under the family Liliaceae.

| S-EPMC7748673 | biostudies-literature

Characterization of the complete chloroplast genome of Clematis potaninii (Ranunculaceae), a medicinal and ornamental plant.

Project description:Clematis potaninii Maxim. is an important medicinal and ornamental plant. The length of C. potaninii chloroplast genome was 159,691 bp, with a large single-copy region of 79,503 bp, a small single-copy region of 18,106 bp, and two inverted repeat regions of 31,041 bp each. The chloroplast genome contains 138 genes including 94 protein-coding, eight rRNA, and 36 tRNA genes. Phylogenetic analysis showed that C. potaninii is closely related to C. alternata.

| S-EPMC9291703 | biostudies-literature

The complete chloroplast genome of the ornamental plant Primula violaris (Primulaceae).

Project description:Primula violaris is a perennial herb distributed throughout the western part of Hubei Province and the southern part of Shaanxi Province, China. We present on of the first reports of the complete chloroplast genome sequence for P. violaris. The complete chloroplast genome was 153,630 bp in size, including a large single-copy (LSC) region of 84,526 bp, a small single-copy (SSC) region of 17,812 bp, and a pair of inverted repeat (IR) regions of 25,646 bp. There were 130 genes in the chloroplast genome, including 86 CDSs, 36 transfer RNA (tRNA) genes, and eight rRNA genes. Phylogenetic analysis showed that P. violaris is closely related to P. oreodoxa. (NC_050848).

| S-EPMC8635539 | biostudies-literature

The complete chloroplast genome of ornamental plant Ruellia simplex C.Wright (Acanthaceae).

Project description:Ruellia simplex C.Wright is a perennial plant of the Acanthaceae, which has significant ornamental value. Because of its strong adaptability, it is widely planted in Chinese rural areas. Based on sequencing data from Illumina, the first complete chloroplast (cp) genome of Ruellia simplex C.Wright is reported in this paper. This cp genome was 143,016bp in length, including a large single-copy region (LSC) of 91,857bp, a small single-copy (SSC) of 17,591bp and two inverted repeat regions (IRs) of 16,784bp. It contained 128 genes, 35 transfer RNA genes, 8 ribosomal RNA genes, with an overall GC content of 38.41%. Additionally, the phylogenetic analysis showed that Ruellia simplex is closely related to Strobilanthes cusia (NC_037485), Strobilanthes bantonensis (MT576695) and Echinacanthus attenuatus (NC_039762). The results of this study provide valuable information for the continued study of its species evolution, genetic engineering and germplasm resource utilization.

| S-EPMC8344733 | biostudies-literature

The complete chloroplast genome of Ophiopogon japonicus, an ornamental and medicinal plant.

Project description:Ophiopogon japonicus, extensively distributed in East Asia, is widely used in landscaping, the tuber of which also play a vital role in Oriental Medicine. Here, we reported the complete chloroplast genome which exhibited a typical quadripartite structure, 156,679?bp in length with 37.7% overall GC content, including 131 protein-coding genes, 37 transfer RNA genes, eight ribosomal RNA genes, and one pseudogene. Phylogenetic analysis suggested that O. japonicus has a close relationship to Liriope spicata.

| S-EPMC7706634 | biostudies-literature

The complete chloroplast genome of the Lonicera maackii (Caprifoliaceae), an ornamental plant.

Project description:Lonicera maackii, is scattered in west and northeast China as well as adjacent Korea, Japan and the Soviet union. Here, we assembled and characterized the complete chloroplast (cp) genome of L. maackii using Illumina sequencing data for the first time. The complete cp genome was 155,337 bp in length, consisting of a pair of inverted repeats of 23,718 bp, a large single-copy region of 89,221 bp and a small single-copy region of 18,680 bp. The genome encoded 113 unique genes, including 79 protein-coding genes, 30 tRNA genes and four rRNA genes. Phylogenetic analysis based on 25 complete cp genome sequences indicated that L. maackii is closely related to Lonicera sachalinensis and Lonicera insularis.

| S-EPMC7748521 | biostudies-literature

The complete chloroplast genome of Cerasus dictyoneura, an ornamental plant of China.

Project description:The complete cp genome of Cerasus dictyoneura was 158,084 bp in length, consisting of a LSC of 86,275 bp and a SSC of 19,039 bp, which were separated by a pair of 26,385 bp IRs. The genome contained 131 genes, including 86 proteincoding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content is 36.7%, while the corresponding values of the LSC, SSC, and IR regions are 34.6, 29.5, and 42.6%, respectively. Furthermore, phylogenetic analysis based on 16 complete cp genome sequences indicated that C. dictyoneura is within Eurosids I.

| S-EPMC7707308 | biostudies-literature

The complete chloroplast genome of the Buddleja alternifolia (Buddleiaceae), an ornamental plant.

Project description:Buddleja alternifolia is China's specialty, and scattered in northwest China. Here, we assembled and characterized the complete chloroplast (cp) genome of B. alternifolia using Illumina sequencing data for the first time. The complete cp genome was 154,280 bp in length, consisting of a pair of inverted repeats of 25,440 bp, a large single-copy (LSC) region of 85,330 bp, and a small single-copy (SSC) region of 18,070 bp. The genome encoded 115 unique genes, including 80 protein-coding genes, 31 tRNA genes, and four rRNA genes. Phylogenetic analysis based on 16 complete cp genome sequences indicated that B. alternifolia is closely related to Buddleja colvilei.

| S-EPMC7748639 | biostudies-literature