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Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885).

ABSTRACT: In this study, we first assembled and characterized the complete chloroplast genome of red seaweed Halymenia maculata. It is 190,431?bp in length, with an AT content of 70.56%. In total, 122 genes were identified, and they consisted of 87 protein-coding genes, 33 tRNA genes, and two rRNA genes. The chloroplast genome of H. maculata did not show an obvious quadripartite structure. A total of five microsatellites (SSRs) were identified in the genome using MISA. Phylogenetic analysis revealed that H. maculata was first clustered with Grateloupia filicina and Grateloupia taiwanensis in a monophyletic clade that provides useful data for the phylogeny and taxonomy of Rhodymeniophycidae.

SUBMITTER: Tan W

PROVIDER: S-EPMC7687420 | biostudies-literature | 2019 Jul

REPOSITORIES: biostudies-literature

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Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885).

Tan Wei W Wang Rongxia R Liu Hongtao H Wang Yongbo Y Ke Hongji H Fan Jiawei J Chen Fuxiao F

Mitochondrial DNA. Part B, Resources 20190711 2

In this study, we first assembled and characterized the complete chloroplast genome of red seaweed Halymenia maculata. It is 190,431 bp in length, with an AT content of 70.56%. In total, 122 genes were identified, and they consisted of 87 protein-coding genes, 33 tRNA genes, and two rRNA genes. The chloroplast genome of H. maculata did not show an obvious quadripartite structure. A total of five microsatellites (SSRs) were identified in the genome using MISA. Phylogenetic analysis ...[more]

PMID: 33365501

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