Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome sequence of Schisandra chinensis (Austrobaileyales: Schisandraceae).

ABSTRACT: Chinese magnolia vine (Schisandra chinensis) is an economically important oriental medicinal plant that belongs to the Schisandraceae family. The complete mitochondrial genome sequence of S. chinensis was 946,141 bp in length. A total of 45 genes was annotated, including 30 protein-coding genes, 12 tRNA genes, and 3 rRNA genes. A phylogenetic tree based on the mitochondrial genome demonstrated that S. chinensis was most closely related to Schisandra sphenanthera of the Schisandraceae family.

SUBMITTER: Baek JH

PROVIDER: S-EPMC7687566 | biostudies-literature | 2019 Jul

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete mitochondrial genome sequence of Schisandra chinensis (Austrobaileyales: Schisandraceae).

Baek Jeong-Ho JH Kim Hyo-Jin HJ Kang Sang-Ho SH Kwon Soo-Jin SJ Kim Chang-Kug CK

Mitochondrial DNA. Part B, Resources 20190713 2

Chinese magnolia vine (Schisandra chinensis) is an economically important oriental medicinal plant that belongs to the Schisandraceae family. The complete mitochondrial genome sequence of S. chinensis was 946,141 bp in length. A total of 45 genes was annotated, including 30 protein-coding genes, 12 tRNA genes, and 3 rRNA genes. A phylogenetic tree based on the mitochondrial genome demonstrated that S. chinensis was most closely related to Schisandra sphenanthera of th ...[more]

PMID: 33365593

Similar Datasets

The complete mitochondrial genome of Schisandra sphenanthera (Schisandraceae).

Project description:Schisandra sphenanthera (Austrobaileyales) is a famous traditional Chinese medicine being long-history used, is also one of early-diverging angiosperms and important links to uncover the early evolution of angiosperms. Here the complete mitochondrial genome of S. sphenanthera was obtained for the first time. It is 1,106,521 bp in length with 46.4% GC content. It contains 58 genes, including 41 protein coding genes, three ribosomal RNA genes and 14 transfer RNA genes. Phylogenetic analysis indicated that S. sphenanthera was placed in the basal angiosperm just after Amborella and Nuphar. The mitogenome of S. sphenanthera would provide a reliable genetic and evolutionary resource.

| S-EPMC7800571 | biostudies-literature

Characterization of the complete chloroplast genome sequence of Schisandra propinqua subsp. sinensis (Oliv.) R.M.K.Saunders 1997 (Schisandraceae).

Project description:Schisandra propinqua subsp. sinensis (Oliv.) R.M.K. Saunders 1997, a woody vine plant esteemed for its medicinal properties, has garnered attention in botanical research. In this study, we elucidated the complete chloroplast genome sequence of S. propinqua. The genome spans 145,562 bp and comprises a large single-copy (LSC) region of 94,164 bp, a small single-copy region of 18,294 bp (SSC), and a pair of inverted repeats (IR) of 16,552 bp. Notably, S. propinqua exhibits an overall GC content of 36.2%. Annotation revealed a total of 116 genes, encompassing 81 protein-coding genes, 27 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. Phylogenetic analysis unveiled a close relationship among Schisandraceae, indicating the evolutionary proximity. This comprehensive genomic dataset provides valuable insights into the genetic makeup and evolutionary dynamics within the Schisandra genus.

| S-EPMC11451272 | biostudies-literature

The complete chloroplast genome and phylogenetic analysis of a rare species Schisandra macrocarpa (Schisandraceae).

Project description:Schisandra macrocarpa Lin & Shui, 2011, belongs to the family Schisandraceae and was recently added to the List of National Key Protected Wild Plants in China. We report the complete chloroplast (cp) genome of S. macrocarpa using Illumina Nova-Seq 6000 platform. The results showed that the cp genome size of S. macrocarpa was 144,288 bp, which contained a small single-copy (SSC) region (17,862 bp), a large single-copy (LSC) region (93,332 bp), and a pair of inverted repeat (IR) regions (16,547 bp). The cp genome has 40% overall GC content. Annotated genes were 128 in all, including 83 protein-coding genes, eight rRNA genes, and 37 tRNA genes. The phylogenetic analysis showed that S. macrocarpa was closely related to S. propinqua subsp. sinensis. This work contributes to the conservation of this species and the evolutionary analysis of Schisandraceae.

| S-EPMC11648132 | biostudies-literature

Characterization and genetic analysis of the complete chloroplast genome of Schisandra chinensis (Magnoliaceae: Schisandra), an herbal medicine from China.

Project description:Schisandra chinensis is a deciduous woody vine plant that has been used in traditional medicine for thousands of years in China. In this study, we researched the complete chloroplast genome of S. chinensis. The complete chloroplast genome length is 147,779 bp, containing a large single-copy region (LSC) of 97,352bp, a small single-copy region (SSC) of 20,313 bp, and a pair of inverted repeat (IR) regions of 15,057 bp. The overall nucleotide composition is: A of 29.8%, T of 30.8%, C of 20.2%, and G of 19.2%, with a total GC-content of the chloroplast genome 39.4% and AT of 60.6%. Whole chloroplast genome of S. chinensis contains 126 genes, including 83 protein-coding genes (PCG), 35 transfer RNA (tRNAs) genes, and 8 ribosome RNA (rRNAs) genes. Phylogenetic and genetic analysis based on 30 herbal species confirmed the position of S. chinensis closely related to S. sphenanthera. The complete chloroplast genome of S. chinensis provides more molecular data for the genetic diversity and genetic evolutionary relationship of this species in China.

| S-EPMC7687546 | biostudies-literature

Complete mitochondrial genome of the Loligo chinensis.

Project description:In this study, we determined the complete mitochondrial genome of Loligo chinensis. The genome was 17,353 bp in length and contained 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and 3 main non-coding regions. The overall base composition of L. chinensis is A 38.62%, C 19.40%, T32.37% and G 9.61%, with a highly A + T bias of 70.99%. All of the three control regions (CR) contain termination-associated sequences and conserved sequence blocks. Here, we describe a phylogenetic analysis of 11 species Cephalopoda based on the complete mitochondrial genome; the result showed that the Loligo edulis is most closely related to L. chinensis. This mitogenome sequence data would play an important role in the investigation of phylogenetic relationship, taxonomic resolution and phylogeography of the Cephalopoda.

| S-EPMC7800812 | biostudies-literature

Complete genome sequence of Bacillus thuringiensis subsp. chinensis strain CT-43.

Project description:Bacillus thuringiensis has been widely used as an agricultural biopesticide for a long time. As a producing strain, B. thuringiensis subsp. chinensis strain CT-43 is highly toxic to lepidopterous and dipterous insects. It can form various parasporal crystals consisting of Cry1Aa3, Cry1Ba1, Cry1Ia14, Cry2Aa9, and Cry2Ab1. During fermentation, it simultaneously generates vegetative insecticidal protein Vip3Aa10 and the insecticidal nucleotide analogue thuringiensin. Here, we report the finished, annotated genome sequence of B. thuringiensis strain CT-43.

| S-EPMC3133296 | biostudies-literature

The complete chloroplast genome sequence of Clematis chinensis Osbeck.

Project description:Clematis chinensis Osbeck is an important medicinal and edible plant. The complete chloroplast genome of C. chinensis Osbeck was constructed and annotated for the first time in this study. Full length of the chloroplast genome of C. chinensis Osbeck is 159,647 bp, with a large single-copy (LSC) region of 86,301 bp, a small single-copy (SSC) region of 79,536 bp, and a pair of inverted repeats IRa and IRb regions of 31,039 bp. The result of the gene annotation identified the 135 genes in the chloroplast genome, including 91 protein-coding genes, 36 tRNA genes, and eight rRNA genes. The total amount of GC is 47.82%. In the phylogenetic analysis, C. chinensis Osbeck showed the closest relationship with Clematis uncinata.

| S-EPMC9704094 | biostudies-literature

The complete chloroplast genome sequence of Campylandra chinensis (Liliaceae).

Project description:The complete chloroplast genome of Campylandra chinensis from China was analyzed using next-generation sequencing. The chloroplast genome was a 169,419 bp circular molecule and was predicted to contain a large single copy (LSC) of 86,752 bp and a small single copy (SSC) of 21,363 bp, which were separated by a pair of 25,340 bp inverted repeats (IRs). A total of 132 unique genes were annotated, including 86 protein coding genes, 38 tRNA genes, and 8 rRNA genes. Among these genes, 19 genes contained one or two introns. The overall GC contents of the plastid genome was 37.2%. Phylogenetic analysis showed that C. chinensis and Polygonatum species clustered to one clade with a high bootstrap value at the base of the phylogenetic tree.

| S-EPMC7800404 | biostudies-literature

The complete mitochondrial genome of Mactra chinensis (Bivalvia: Macridae).

Project description:The structure and composition of the mitogenome of a bivalve mollusk, denoted as Mactra sp. (MT780813), has been obtained. The genome has a variable organization: it includes 12 protein-coding genes, 28 tRNAs, and two rRNA genes. Its content is sufficiently different from that of nearest specimen, accessed from GenBank, supposedly belonging to the other gender. All genes are encoded on the "+"-strand. All protein-coding genes are initiated with ATG codon. Analysis confirms the close topological position of the GenBank Mactra chinensis (KJ754823) and our M. sp. specimen on gene tree. Above data suggesting female- vs. male-type mitogenomes or cryptic species presence.

| S-EPMC8425691 | biostudies-literature

The complete chloroplast genome sequence of Rhus chinensis Mill (Anacardiaceae).

Project description:In this study, complete chloroplast genome sequences of Rhus chinensis was characterized by de novo assembly using whole genome sequence data. The chloroplast genome of R. chinensis were 149,011bp long, which was comprised of a large single copy region of 96,882 bp, a small single copy region of 18,647bp, and a pair of inverted repeats of 16,741 bp. The genome contained 77 protein-coding genes, four rRNA genes and 30 tRNA genes. Phylogenetic tree revealed that R. chinensis was closely grouped with Spondias species, S. tuberosa and S. bahiensis, belonging to the Anacardiaceae family.

| S-EPMC7871870 | biostudies-literature