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Mitochondrial genome of a brachypterous species in Meconematinae: Acosmetura nigrogeniculata and its phylogenetic implication.

ABSTRACT: Acosmetura nigrogeniculata (Liu and Wang, 1998) is a brachypterous species in Meconematinae, which is only distributed in China. In this study, the complete mitochondrial genome of A. nigrogeniculata was determined and annotated. The 16,271?bp circular genome contained 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and one control region. The overall base composition was 36.4% A, 34.8% T, 18.4% C, and 10.5% G, exhibiting obvious anti-G and AT bias (71.2%). The general genomic characters including nucleotides composition, gene arrangement, and codon usage were similar to those of other Meconematinae species. Phylogenetic analysis of all nine Meconematinae species indicated that the newly sequenced species were clustered closely with the brachypterous species Pseudosmetura snjiensis.

SUBMITTER: Han N

PROVIDER: S-EPMC7687620 | biostudies-literature | 2019 Jul

REPOSITORIES: biostudies-literature

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Mitochondrial genome of a brachypterous species in Meconematinae: Acosmetura nigrogeniculata and its phylogenetic implication.

Han Ning N Yuan Hao H Wang Jing J Zhou Yafu Y Mao Shaoli S

Mitochondrial DNA. Part B, Resources 20190710 2

Acosmetura nigrogeniculata (Liu and Wang, 1998) is a brachypterous species in Meconematinae, which is only distributed in China. In this study, the complete mitochondrial genome of A. nigrogeniculata was determined and annotated. The 16,271 bp circular genome contained 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and one control region. The overall base composition was 36.4% A, 34.8% T, 18.4% C, and 10.5% G, exhibiting obvious anti-G and AT bias (71.2%). ...[more]

PMID: 33365425

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Project description:BackgroundThe phylogenetic position and classification of Athysanini are poorly defined, as it includes a large group of polyphyletic genera that have historically been assigned to it mainly because they still exhibit the most typical deltocephaline genitalic and external body characters but lack the distinctive characteristics that other tribes possess. The bamboo-feeding leafhopper genus Abrus belong to the tribe Athysanini of subfamily Deltocephalinae, which currently comprises 19 valid described species, and are limited to the Oriental and Palaearctic regions in China. Although the taxonomy of Abrus are well updated, the references on comparative mitogenomic analyses of Abrus species are only known for a single species. In this study, we sequenced and analyzed the complete mitochondrial genomes (mitogenomes) of Abrus daozhenensis Chen, Yang & Li, 2012 (16,391bp) and A. yunshanensis Chen, Yang & Li, 2012 (15,768bp) (Athysanini), and compared with published mitogenome sequence of A. expansivus Xing & Li, 2014 (15,904bp).ResultsThese Abrus species shared highly conserved mitogenomes with similar gene order to that of the putative ancestral insect with 37 typical genes and a non-coding A + T-rich region. The nucleotide composition of these genomes is highly biased toward A + T nucleotides (76.2%, 76.3%, and 74.7%), AT-skews (0.091 to 0.095, and 0.095), negative GC-skews (- 0.138, - 0.161, and - 0.138), and codon usage. All 22 tRNA genes had typical cloverleaf secondary structures, except for trnS1 (AGN) which lacks the dihydrouridine arm, and distinctively trnG in the mitogenome of A. expansivus lacks the TψC arm. Phylogenetic analyses based on 13 PCGs, 2 rRNA genes, and 22 tRNA genes consistently recovered the monophyletic Opsiini, Penthimiini, Selenocephalini, Scaphoideini, and Athysanini (except Watanabella graminea, previously sequenced species as Chlorotettix nigromaculatus) based on limited available mitogenome sequence data of 37 species.ConclusionAt present, Abrus belongs to the tribe Athysanini based on both morphological and molecular datasets, which is strongly supported in present phylogenetic analyses in both BI and ML methods using the six concatenated datasets: amino acid sequences and nucleotides from different combinations of protein-coding genes (PCGs), ribosomal RNA (rRNAs), and transfer RNA (tRNAs). Phylogenetic trees reconstructed herein based on the BI and ML analyses consistently recovered monophylitic Athysanini, except Watanabella graminea (Athysanini) in Opsiini with high support values.

Dataset Information

Mitochondrial genome of a brachypterous species in Meconematinae: Acosmetura nigrogeniculata and its phylogenetic implication.

Publications

Mitochondrial genome of a brachypterous species in Meconematinae: <i>Acosmetura nigrogeniculata</i> and its phylogenetic implication.

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