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Viral diversity in oral cavity from Sapajus nigritus by metagenomic analyses.


ABSTRACT: Sapajus nigritus are non-human primates which are widespread in South America. They are omnivores and live in troops of up to 40 individuals. The oral cavity is one of the main entry routes for microorganisms, including viruses. Our study proposed the identification of viral sequences from oral swabs collected in a group of capuchin monkeys (n = 5) living in a public park in a fragment of Mata Atlantica in South Brazil. Samples were submitted to nucleic acid extraction and enrichment, which was followed by the construction of libraries. After high-throughput sequencing and contig assembly, we used a pipeline to identify 11 viral families, which are Herpesviridae, Parvoviridae, Papillomaviridae, Polyomaviridae, Caulimoviridae, Iridoviridae, Astroviridae, Poxviridae, and Baculoviridae, in addition to two complete viral genomes of Anelloviridae and Genomoviridae. Some of these viruses were closely related to known viruses, while other fragments are more distantly related, with 50% of identity or less to the currently available virus sequences in databases. In addition to host-related viruses, insect and small vertebrate-related viruses were also found, as well as plant-related viruses, bringing insights about their diet. In conclusion, this viral metagenomic analysis reveals, for the first time, the profile of viruses in the oral cavity of wild, free ranging capuchin monkeys.

SUBMITTER: Dos Santos RN 

PROVIDER: S-EPMC7688769 | biostudies-literature | 2020 Dec

REPOSITORIES: biostudies-literature

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Viral diversity in oral cavity from Sapajus nigritus by metagenomic analyses.

Dos Santos Raissa Nunes RN   Campos Fabricio Souza FS   Finoketti Fernando F   Dos Santos Anne Caroline AC   Campos Aline Alves Scarpellini AAS   Wagner Paulo Guilherme Carniel PGC   Roehe Paulo Michel PM   de Carvalho Ruthner Batista Helena Beatriz HB   Franco Ana Claudia AC  

Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] 20200811 4


Sapajus nigritus are non-human primates which are widespread in South America. They are omnivores and live in troops of up to 40 individuals. The oral cavity is one of the main entry routes for microorganisms, including viruses. Our study proposed the identification of viral sequences from oral swabs collected in a group of capuchin monkeys (n = 5) living in a public park in a fragment of Mata Atlantica in South Brazil. Samples were submitted to nucleic acid extraction and enrichment, which was  ...[more]

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