GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.
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ABSTRACT:
Availability: GTDB-Tk is implemented in Python and licensed under the GNU General Public License v3.0. Source code and documentation are available at: https://github.com/ecogenomics/gtdbtk.
Supplementary information: Supplementary data are available at Bioinformatics online.
SUBMITTER: Chaumeil PA
PROVIDER: S-EPMC7703759 | biostudies-literature | 2019 Nov
REPOSITORIES: biostudies-literature
Publications
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.
Chaumeil Pierre-Alain PA Mussig Aaron J AJ Hugenholtz Philip P Parks Donovan H DH
Bioinformatics (Oxford, England) 20191115
<h4>Summary</h4>The GTDB Toolkit (GTDB-Tk) provides objective taxonomic assignments for bacterial and archaeal genomes based on the Genome Taxonomy Database (GTDB). GTDB-Tk is computationally efficient and able to classify thousands of draft genomes in parallel. Here we demonstrate the accuracy of the GTDB-Tk taxonomic assignments by evaluating its performance on a phylogenetically diverse set of 10,156 bacterial and archaeal metagenome-assembled genomes.<h4>Availability</h4>GTDB-Tk is implement ...[more]
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