Browse
Submit Data
Databases
API
Help

Dataset Information

14 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The mitochondrial genome of Nephrotoma Tenuipes (Diptera Tipulidae).

ABSTRACT: The crane fly Nephrotoma tenuipes belongs to family Tipulidae. The mitogenome of N. tenuipes was sequenced, the new representative of the mitogenome of the family Tipulidae. The nearly complete mitogenome is 14,851?bp totally, consisting of 13 protein-coding genes, 2 rRNAs and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Tipulidae. The nucleotide composition biases toward A and T, which together made up 76.04?of the entirety. Bayesian inference analysis strongly supported the monophyly of Tipuloidea. It suggested that the phylogenetic relationship within Tipuloidea is Pediciidae?+?(Limoniidae?+?(Tipulidae?+?Cylindrotomidae)).

SUBMITTER: Ren J

PROVIDER: S-EPMC7706615 | biostudies-literature | 2019 Sep

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The mitochondrial genome of Nephrotoma Tenuipes (Diptera Tipulidae).

Ren Jinlong J Zhang Chunmin C Chang Wencheng W Yang Ding D

Mitochondrial DNA. Part B, Resources 20190919 2

The crane fly Nephrotoma tenuipes belongs to family Tipulidae. The mitogenome of N. tenuipes was sequenced, the new representative of the mitogenome of the family Tipulidae. The nearly complete mitogenome is 14,851 bp totally, consisting of 13 protein-coding genes, 2 rRNAs and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Tipulidae. The nucleotide composition biases toward A and T, which together made up 76.04％of the enti ...[more]

PMID: 33365867

Similar Datasets

Tipula (Vestiplex) crane flies (Diptera, Tipulidae) of Korea.

Project description:The Korean species of Tipula (Vestiplex) Bezzi, 1924 crane flies are taxonomically revised. Five species are recognized. Tipula (V.) coquillettiana Alexander, 1924, T. (V.) kuwayamai Alexander, 1921, T. (V.) tchukchi Alexander, 1934, and T. (V.) verecunda Alexander, 1924 are newly recorded from the Korean Peninsula, and T. (V.) serricauda Alexander, 1914 was previously recorded. The larva of T. (V.) serricauda is described and illustrated, and the larvae of the subgenus T. (Vestiplex) are divided into four groups based on spiracular lobe morphology. An identification key, redescriptions, and illustrations of Korean T. (Vestiplex) adults and grouping of known larvae are presented.

| S-EPMC8516825 | biostudies-literature

New synonym of Tipula (Vestiplex) wahlgrenana Alexander, 1968 (Diptera: Tipulidae).

Project description:Based on examination of type specimens a crane fly species Tipula (Vestiplex) hugueniniana Alexander, 1971 is proposed as junior synonym of Tipula (V.) wahlgrenana Alexander, 1968. The new synonymy is based on similarity of male genitalia.

| S-EPMC4290538 | biostudies-literature

Tanyptera (Tanyptera) hebeiensis Yang et Yang (Diptera: Tipulidae) newly recorded from Shandong, China: sequencing and phylogenetic analysis of the mitochondrial genome.

Project description:The genus Tanyptera Latreille, 1804 is recorded from Shandong Province, China for the first time with T. (T.) hebeiensis Yang et Yang, 1988 found in Mount Kunyu, Shandong. In this study, we report the complete mitochondrial genome sequence of T. (T.) hebeiensis, representing the first mitochondrial genome of the subfamily Ctenophorinae (Diptera: Tipulidae), which is a circular molecule of 15,888 bp with an AT content of 77.6%. The mitochondrial genome contains 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs), and a non-coding region. Gene overlaps are found at nine gene junctions, ranging from 1 to 8 bp in length. The canonical mitochondrial start codons for invertebrate mitochondrial genomes are found in 12 PCGs, except for COI which uses the uncanonical start codons TCG. Stop codons of 10 PCGs are invariably complete TAA and TAG, while COII, ND4, and ND5 end with a single thymine stop codon. Phylogenetic analysis reveals that the Pediciidae is a sister group to the remaining Tipuloidea, the Cylindrotomidae has a sister-group relationship with the Tipulidae, and the Limoniidae is not a monophyletic clade.

| S-EPMC7819113 | biostudies-literature

Nephrotoma Meigen (Diptera, Tipulidae) from Xizang Autonomous Region, China.

Project description:Eight species of the genus Nephrotoma were previously known to occur in Xizang Autonomous Region. Here, three species are added to the fauna of Xizang. Among them two species, N. beibengensis sp. nov. and N. hanae sp. nov. are described and illustrated as new to science, and one species, N. evittata Alexander, 1935 is recorded from Xizang for the first time. The following four species are redescribed: N. claviformis Yang & Yang, 1987, N. didyma Yang & Yang, 1987, N. nigrohalterata Edwards, 1928, and N. xizangensis Yang & Yang, 1987. A key to the species of Nephrotoma from Xizang is presented.

| S-EPMC7550393 | biostudies-literature

Tipula (Vestiplex) butvilai sp. nov., a new crane fly (Diptera, Tipulidae) from Yunnan, China.

Project description:A new crane fly, Tipula (Vestiplex) butvilaisp. nov., is described and illustrated based on new material collected in the Nu Jiang Valley of Yunnan Province, China. The hypopygium for the most closely related species, Tipula (Vestiplex) testata Alexander, 1935, is also illustrated. A key is provided to distinguish males of the new species from those of other species in the T. (V.) bicornigera Alexander, 1938 species group.

| S-EPMC6690884 | biostudies-other

Description and DNA barcoding of Tipula ( Pterelachisus) recondita sp. n. from the Palaearctic region (Diptera, Tipulidae).

Project description:Tipula (Pterelachisus) recondita Pilipenko & Salmela, sp. n. is described. The new species is collected from two localities: Finland, Kittilä (North boreal ecoregion) and Russia, Primorski kray (Zone of temperate broadleaf and mixed forests). Although variation in the structure of male hypopygium between the Finnish and Russian populations is observed, DNA barcode sequences differ only by three nucleotides (0.2 % K2P distance), supporting presence of one widespread species. K2P minimum distances between the new species and 17 other species of the subgenus range from 5.3 to 15.8 % (mean 8.8 %). The new species is forest-dwelling, known from an old-growth herb-rich forest (Finland) and Quercus mongolica forest (Russia). The new species is perhaps closest to Tipula (Pterelachisus) imitator Alexander and in lesser extent to Tipula (Pterelachisus) pauli Mannheims; the inner gonostylus of both species are illustrated.

| S-EPMC3349062 | biostudies-literature

The mitochondrial genome of Oreogeton sp. (Diptera: Empididae).

Project description:The dance fly Oreogeton sp. belongs to the subfamily Oreogetoninae of Empididae. The mitogenome of Oreogeton sp. (GenBank accession number: MK639348) was sequenced, the first representative of the mitogenome of the subfamily. The nearly complete mitogenome is 15,718?bp totally, consisting of 13 protein-coding genes, two rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Empididae. The nucleotide composition biases toward A and T, which together made up 77.2?of the entirety. Bayesian inference analysis strongly supported the monophyly of Empidoidea, Empididae, and Dolichopodidae. This result also suggested that Oreogetoninae was assigned to the sister group to the clade that consists of Trichopezinae and Clinocerinae, and then Empidinae is the sister to the clade that contains Oreogetoninae, Trichopezinae, and Clinocerinae.

| S-EPMC7687517 | biostudies-literature

The mitochondrial genome of Suillia sp. (Diptera: Heleomyzidae).

Project description:The mitogenome of Suillia sp. was sequenced as the first representative of the family Heleomyzidae. The mitogenome is 15,660?bp totally, consisting of 13 protein-coding genes, 2 rRNAs, and 22 transfer RNAs. The nucleotide composition biases toward A and T is 75.1? of the entirety. All PCGs start with ATN codons except COI and ND1 and end with TAA or incomplete stop codon. Phylogenetic analyses based on 9 dipteran species supported the relationship of Opomyzoidea + (Ephydroidea + (Lauxanioidea + (Sciomyzoidea + (Sphaeroceroidea?+?Tephritoidea)))).

| S-EPMC7706466 | biostudies-literature

The mitochondrial genome of Formicosepsis sp. (Diptera: Cypselosomatidae).

Project description:The mitochondrial genome of Formicosepsis sp. was sequenced and annotated as the first representative of family Cypselosomatidae and superfamily Nerioidea. The part mitochondrial genome of Formicosepsis sp. is 15,144?bp totally, consisting of 13 protein-coding genes, two rRNAs, and 22 transfer RNAs, which has a similar gene structure with other published species of Diptera. The nucleotide composition biases toward A and T is 76.4% of the entirety. IQ-tree analysis revealed that the outgroups Anopheles oryzalimnetes and Simulium variegatum diverged from the rest. The Nerioidea represented by Formicosepsis sp. was sister group to Opomyzoidea. The Sciomyzoidea consisting of Sciomyzidae and Sepsidae is a monophyletic clade at the base of Acalyptratae.

| S-EPMC7687536 | biostudies-literature

The mitochondrial genome of Argyra pingwuensis (Diptera: Dolichopodidae).

Project description:The long-legged fly Argyra pingwuenesis Qilemoge, Wang et Yang (Genbank accession number: MK905737) belongs to the subfamily Diaphorinae of Dolichopodidae. The mitogenome of A. pingwuenesis was sequenced, the first representative of the mitogenome of the subfamily. The mitogenome is 15,859?bp long, consisting of 13 protein-coding genes, 2 rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Dolichopodidae. The nucleotide composition biases toward A and T, which together made up 74.6% of the entirety. Bayesian inference analysis strongly supported the monophyly of Dolichopodidae. It suggested that subfamily Diaphorinae is the sister group of subfamily Rhaphiinae.

| S-EPMC7687435 | biostudies-literature