Dataset Information

The complete chloroplast genome of an albino tea, Camellia sinensis cultivar 'Baiye 1'.

ABSTRACT: For obtaining the sequence and phylogenetic position of Camellia sinensis cultivar 'Baiye1', the complete chloroplast genome was determined. This chloroplast genome is 156,691?bp in length with overall GC content of 37.3%. It was comprised of a large single-copy (LSC) region of 86,585bp, a small single-copy (SSC) region of 18,276bp, and two inverted repeat (IR) regions of 26,083?bp. It contains 87 protein-coding, 8 rRNA, and 35 tRNA genes. Phylogenetic analysis showed 'Baiye1' and C. sinensis cv. 'Longjing43' were clustered into a group. These results may contribute to the further understanding of the albino phenotype and genetic evolution.

SUBMITTER: Hao WJ

PROVIDER: S-EPMC7706807 | biostudies-literature | 2019 Sep

REPOSITORIES: biostudies-literature

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The complete chloroplast genome of an albino tea, Camellia sinensis cultivar 'Baiye 1'.

Hao Wan-Jun WJ Wang Songlin S Yao Mingzhe M Ma Jian-Qiang JQ Xu Yan-Xia YX Chen Liang L

Mitochondrial DNA. Part B, Resources 20190920 2

For obtaining the sequence and phylogenetic position of Camellia sinensis cultivar 'Baiye1', the complete chloroplast genome was determined. This chloroplast genome is 156,691 bp in length with overall GC content of 37.3%. It was comprised of a large single-copy (LSC) region of 86,585bp, a small single-copy (SSC) region of 18,276bp, and two inverted repeat (IR) regions of 26,083 bp. It contains 87 protein-coding, 8 rRNA, and 35 tRNA genes. Phylogenetic analysis showed 'Baiye1' and C. s ...[more]

PMID: 33365890

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Project description:BackgroundChloroplast genome resources can provide useful information for the evolution of plant species. Tea plant (Camellia sinensis) is among the most economically valuable member of Camellia. Here, we determined the chloroplast genome of the first natural triploid Chinary type tea ('Wuyi narcissus' cultivar of Camellia sinensis var. sinensis, CWN) and conducted the genome comparison with the diploid Chinary type tea (Camellia sinensis var. sinensis, CSS) and two types of diploid Assamica type teas (Camellia sinensis var. assamica: Chinese Assamica type tea, CSA and Indian Assamica type tea, CIA). Further, the evolutionary mechanism of the chloroplast genome of Camellia sinensis and the relationships of Camellia species based on chloroplast genome were discussed.ResultsComparative analysis showed the evolutionary dynamics of chloroplast genome of Camellia sinensis were the repeats and insertion-deletions (indels), and distribution of the repeats, indels and substitutions were significantly correlated. Chinese tea and Indian tea had significant differences in the structural characteristic and the codon usage of the chloroplast genome. Analysis of sequence characterized amplified region (SCAR) using sequences of the intergenic spacers (trnE/trnT) showed none of 292 different Camellia sinensis cultivars had similar sequence characteristic to triploid CWN, but the other four Camellia species did. Estimations of the divergence time showed that CIA diverged from the common ancestor of two Assamica type teas about 6.2 Mya (CI: 4.4-8.1 Mya). CSS and CSA diverged to each other about 0.8 Mya (CI: 0.4-1.5 Mya). Moreover, phylogenetic clustering was not exactly consistent with the current taxonomy of Camellia.ConclusionsThe repeat-induced and indel-induced mutations were two important dynamics contributed to the diversification of the chloroplast genome in Camellia sinensis, which were not mutually exclusive. Chinese tea and Indian tea might have undergone different selection pressures. Chloroplast transfer occurred during the polyploid evolution in Camellia sinensis. In addition, our results supported the three different domestication origins of Chinary type tea, Chinese Assamica type tea and Indian Assamica type tea. And, the current classification of some Camellia species might need to be further discussed.

Dataset Information

The complete chloroplast genome of an albino tea, Camellia sinensis cultivar 'Baiye 1'.

Publications

The complete chloroplast genome of an albino tea, <i>Camellia sinensis</i> cultivar 'Baiye 1'.

Similar Datasets

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