Dataset Information

The complete chloroplast genome sequence of Vitis davidii Foex strain 'SJTU003'.

ABSTRACT: In the present study, the complete chloroplast genome of Vitis davidii Foex strain 'SJTU003' was assembled and subjected to phylogenetic analysis. This chloroplast genome of 'SJTU003' was 161,335?bp in length, including two inverted repeat regions (IRa and IRb) that were separated by a large single-copy region (89,570?bp) and a small single-copy region (19,059?bp). The genome contained 133 genes, including 88 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis indicated that V. davidii is most closely related to Vitis flexuosa and Vitis amurensis.

SUBMITTER: Tian Q

PROVIDER: S-EPMC7707350 | biostudies-literature | 2019 Oct

REPOSITORIES: biostudies-literature

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The complete chloroplast genome sequence of <i>Vitis davidii</i> Foex strain 'SJTU003'.

Tian Quanyou Q Fu Peining P Wu Wei W Li Rongfang R Koleva Lyubka L Lu Jiang J Song Shiren S Song Shiren S

Mitochondrial DNA. Part B, Resources 20191004 2

In the present study, the complete chloroplast genome of <i>Vitis davidii</i> Foex strain 'SJTU003' was assembled and subjected to phylogenetic analysis. This chloroplast genome of 'SJTU003' was 161,335 bp in length, including two inverted repeat regions (IRa and IRb) that were separated by a large single-copy region (89,570 bp) and a small single-copy region (19,059 bp). The genome contained 133 genes, including 88 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis ind ...[more]

PMID: 33365998

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Project description:Phenolic extracts from berry seeds have been extensively studied for their health benefits. However, few studies have been conducted on the effects of phenolic extracts from Vitis L. canes and berry stems. The Chinese spine grape (V. davidii Foex) is an important and widely distributed wild species of Vitis L. The present study explored the metabolomic profile and evaluated the antioxidant activity of phenolic compounds in extracts from V. davidii Foex. canes and stems, with a focus on their role in preventing DNA damage caused by free radicals and inhibiting the growth of breast (MCF-7) and cervical (HeLa) cancer cells. Total phenolic compounds in the dried berry stems of spine grapes were higher than that in vine canes. Analysis of the extracts showed that proanthocyanins, epicatechin, catechin, and phenolic acid were the main phenolic compounds in V. davidii Foex, but in higher quantities in berry stems than in vine canes. However, trans-resveratrol and kaempferol 3-O-glucoside were present in the vine canes but not in the berry stems. Antioxidant analysis by FRAP and ABTS showed that extracts from berry stems and vine canes had a higher antioxidant activity than thinned young fruit shoots before flowering, leaves, peel, pulp, and seeds in V. davidii Foex. Moreover, the antioxidant activity of extracts from berry stems was higher than that in other grape species, except for muscadine. In vitro analyses further showed that the extracts significantly increased H2O2 scavenging ability and conferred a protective effect against DNA damage. Furthermore, a low concentration of phenolic compounds in extracts from the vine canes and berry stems of spine grapes inhibited the proliferation of the MCF-7 and Hela cancer cells. These research results provided some important useful information for the exploitation of V. davidii Foex canes and berry stems and indicated that canes and stems of V. davidii Foex had good antioxidant properties, anticancer activity and prevented DNA damage, providing evidence for medical utilization of V. davidii Foex.

Dataset Information

The complete chloroplast genome sequence of Vitis davidii Foex strain 'SJTU003'.

Publications

The complete chloroplast genome sequence of <i>Vitis davidii</i> Foex strain 'SJTU003'.

Similar Datasets

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