Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete mitochondrial genome sequence and phylogenetic implications of Chorosoma macilentum (Heteroptera: Rhopalidae).

ABSTRACT: The complete mitogenome of Chorosoma macilentum Stål, 1858 was obtained using a next-generation sequencing approach, which is the first report in genus Chorosoma. The genome is 16,330?bp long with high A?+?T content. The phylogenetic analyses based on 13 protein-coding genes (PCGs) provide strong support for monophyly of each family within Pentatomomorpha. Chorosoma Macilentum was clustered together with other species within Rhopalidae, and grouped sibling species with Aeschyntelus notatus.

SUBMITTER: Zhao W

PROVIDER: S-EPMC7707503 | biostudies-literature | 2019 Nov

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete mitochondrial genome sequence and phylogenetic implications of Chorosoma macilentum (Heteroptera: Rhopalidae).

Zhao Wanqing W Liu Dajun D Gao Zhizhong Z Liu Jia J Yi Wenbo W Zhang Hufang H

Mitochondrial DNA. Part B, Resources 20191111 2

The complete mitogenome of Chorosoma macilentum Stål, 1858 was obtained using a next-generation sequencing approach, which is the first report in genus Chorosoma. The genome is 16,330 bp long with high A + T content. The phylogenetic analyses based on 13 protein-coding genes (PCGs) provide strong support for monophyly of each family within Pentatomomorpha. Chorosoma Macilentum was clustered together with other species within Rhopalidae, and grouped sibling species with Ae ...[more]

PMID: 33366233

Similar Datasets

The complete mitochondrial genome sequence of Cletus punctiger (Heteroptera: Coreidae).

Project description:Cletus punctiger is a famous economic crop pest in China, especially for rice. Here, we first reported the complete mitochondrial genome sequence of this pest. The mitochondrial genome is 16,166?bp in length, including 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes, and 1 control region (D-Loop). The maximum likelihood (ML) phylogenetic tree confirmed that C. punctiger belonged to the Coreidae subfamily.

| S-EPMC7707217 | biostudies-literature

The complete mitochondrial genome sequence of Cletus rubidiventris (Heteroptera: Coreidae).

Project description:Cletus rubidiventris is a crop pest, especially for rice. This study first reported the complete mitochondrial genome of this species. The total length of mitochondrial genome is 15,590 bp and including 13 PCGs, 22 tRNA genes, and 2 rRNA genes, with 31.8% T, 15.8% C, 41.6% A, and 10.8% G. The overall GC content of the genome is 27%. The mitochondrial genome order, nucleotide composition, and codon usage pattern is similar to C. punctiger. The phylogenetic tree shows that C. rubidiventris belong to the Coreidae.

| S-EPMC7783099 | biostudies-literature

The first mitochondrial genome for the subfamily Asopinae (Heteroptera: Pentatomidae) and its phylogenetic implications.

Project description:Here, we determined the complete mitogenome of Picromerus griseus, the first for the subfamily Asopinae. This mitochondrial genome contains 16,338?bp, with an A?+?T content of 71.69%, and contains 37 typical mitochondrial genes (13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes and a control region). The genome size, gene arrangement, A?+?T content, codon usage and secondary structures of 22 transfer RNA genes of the P. griseus mitogenome were similar to those of other sequenced pentatomoids. Bayesian analyses performed using the mitogenomes of P. griseus and its relatives, including 14 taxa, confirmed the reasonable placement of P. griseus.

| S-EPMC7800504 | biostudies-literature

Characterization of the complete mitochondrial genome of Spirocerca lupi: sequence, gene organization and phylogenetic implications.

Project description:BACKGROUND: Spirocerca lupi is a life-threating parasitic nematode of dogs that has a cosmopolitan distribution but is most prevalent in tropical and subtropical countries. Despite its veterinary importance in canids, the epidemiology, molecular ecology and population genetics of this parasite still remain unexplored. METHODS: The complete mitochondrial (mt) genome of S. lupi was amplified in four overlapping long fragments using primers designed based on partial cox1, rrnS, cox2 and nad2 sequences. Phylogenetic re-construction of 13 spirurid species (including S. lupi) was carried out using Bayesian inference (BI) based on concatenated amino acid sequence datasets. RESULTS: The complete mt genome sequence of S. lupi is 13,780 bp in length, including 12 protein-coding genes, 22 transfer RNA genes and two ribosomal RNA genes, but lacks the atp8 gene. The gene arrangement is identical to that of Thelazia callipaeda (Thelaziidae) and Setaria digitata (Onchocercidae), but distinct from that of Dracunculus medinensis (Dracunculidae) and Heliconema longissimum (Physalopteridae). All genes are transcribed in the same direction and have a nucleotide composition high in A and T. The content of A?+?T is 73.73% for S. lupi, in accordance with mt genomes of other spirurid nematodes sequenced to date. Phylogenetic analyses using concatenated amino acid sequences of the 12 protein-coding genes by BI showed that the S. lupi (Thelaziidae) is closely related to the families Setariidae and Onchocercidae. CONCLUSIONS: The present study determined the complete mt genome sequence of S. lupi. These new mt genome dataset should provide novel mtDNA markers for studying the molecular epidemiology and population genetics of this parasite, and should have implications for the molecular diagnosis, prevention and control of spirocercosis in dogs and other canids.

| S-EPMC3606334 | biostudies-literature

The complete mitochondrial genome sequence of Sinocyclocheilus jii (Cypriniformes: Cyprinidae) and phylogenetic implications.

Project description:In this study, we first determined the complete mitochondrial genome sequence of Sinocyclocheilus jii, which is an endemic species to Southwestern China. The complete mitochondrial genome is 16,577 bp in length, consisting of 37 genes coding for 13 proteins, two rRNAs, 22 tRNAs, and one control region. Its gene arrangement pattern was identical to that of most vertebrates. Phylogenetic analysis using mitochondrial genomes of 11 species showed that nine Sinocyclocheilus species clustered as one monophyletic clade and S. jii was the most basal species on the phylogenetic tree of the Sinocyclocheilus fishes.

| S-EPMC7799893 | biostudies-literature

The first complete mitochondrial genome from the subfamily Phyllocephalinae (Heteroptera: Pentatomidae) and its phylogenetic analysis.

Project description:The true bug, Gonopsis affinis, is an important pest in China. Here, we determined the complete mitogenome of G. affinis, which is the first for the subfamily Phyllocephalinae. This 16,011-basepair (bp) mitogenome comprises of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes, and an A?+?T-rich region. The gene order and the orientation are similar to those of other sequenced Hemipteran species. All PCGs start with ATN codons, except COI, and end with TAA. The 22 tRNAs have a typical cloverleaf secondary structure except trnS-Ser (AGN), which lacks a dihydrouridine (DHU) arm. Phylogenetic analyses highly supported the monophyly of each family, and confirmed the reasonable placement of G. affinis.

| S-EPMC7799901 | biostudies-literature

Characterization of the complete mitochondrial genome of Eysarcoris aeneus (Heteroptera: Pentatomidae), with its phylogenetic analysis.

Project description:In this study, the complete 16,065 bp mitochondrial genome of Eysarcoris aeneus was determined from China using next-generation sequencing technology. It consists of 13 protein-coding genes, 22 tRNAs, 2 ribosomal RNAs, and a control region. Among them, 23 genes were located on J-strand, and the other genes (nad5, nad4, nad4L, nad1, trnQ, trnC, trnY, trnF, trnH, trnP, trnL1, trnV, 12S rRNA, and 16S rRNA) were located on the N-strand. The phylogenetic tree was constructed using MrBayes method based on the 13 protein-coding genes (PCGs) showed the present species clustered within the Pentatomidae. The complete mitogenome data would be useful for further study of Pentatomoidea and Pentatomomorpha.

| S-EPMC7687418 | biostudies-literature

Characterization and Phylogenetic Implications of the Complete Mitochondrial Genome of Syrphidae.

Project description:In this study, the complete mitochondrial genomes (mitogenomes) of two hoverfly species of Korinchia angustiabdomena (Huo, Ren, and Zheng) and Volucella nigricans Coquillett (Diptera: Syrphidae) were determined and analyzed. The circular mitogenomes were 16,473 bp in K. angustiabdomena (GenBank No. MK870078) and 15,724 bp in V. nigricans (GenBank No. MK870079). Two newly sequenced mitogenomes both contained 37 genes, and the gene order was similar with other syrphine species. All the protein-coding genes (PCGs) were started with the standard ATN codons; and most of PCGs were terminated with a TAA stop codon, while ND1 in K. angustiabdomena ended with a TAG codon, and ND5 terminated with truncated T stop codons in both species. The phylogenetic relationship between K. angustiabdomena and V. nigricans with related lineages was reconstructed using Bayesian inference and Maximum-likelihood analyses. The monophyly of each family considered within Muscomorpha was confirmed by the clades in the phylogenetic tree, and superfamily of the Oestroidea (Calliphoridae, Sarcophagidae, and Oestridae) was unexpectedly found to be a paraphyletic group based on our selected data. This mitogenome information for K. angustiabdomena and V. nigricans could facilitate future studies of evolutionarily related insects.

| S-EPMC6723807 | biostudies-literature

The complete mitochondrial genome of Lerema accius and its phylogenetic implications.

Project description:Butterflies and moths (Lepidoptera) are becoming model organisms for genetics and evolutionary biology. Decoding the Lepidoptera genomes, both nuclear and mitochondrial, is an essential step in these studies. Here we describe a protocol to assemble mitogenomes from Next Generation Sequencing reads obtained through whole-genome sequencing and report the 15,338 bp mitogenome of Lerema accius. The mitogenome is AT-rich and encodes 13 proteins, 22 transfer-RNAs, and two ribosomal-RNAs, with a gene order typical for Lepidoptera mitogenomes. A phylogenetic study based on the protein sequences using both Bayesian Inference and Maximum Likelihood methods consistently place Lerema accius with other grass skippers (Hesperiinae).

| S-EPMC4715447 | biostudies-literature

The complete mitochondrial genome of Papilio glaucus and its phylogenetic implications.

Project description:Due to the intriguing morphology, lifecycle, and diversity of butterflies and moths, Lepidoptera are emerging as model organisms for the study of genetics, evolution and speciation. The progress of these studies relies on decoding Lepidoptera genomes, both nuclear and mitochondrial. Here we describe a protocol to obtain mitogenomes from Next Generation Sequencing reads performed for whole-genome sequencing and report the complete mitogenome of Papilio (Pterourus) glaucus. The circular mitogenome is 15,306 bp in length and rich in A and T. It contains 13 protein-coding genes (PCGs), 22 transfer-RNA-coding genes (tRNA), and 2 ribosomal-RNA-coding genes (rRNA), with a gene order typical for mitogenomes of Lepidoptera. We performed phylogenetic analyses based on PCG and RNA-coding genes or protein sequences using Bayesian Inference and Maximum Likelihood methods. The phylogenetic trees consistently show that among species with available mitogenomes Papilio glaucus is the closest to Papilio (Agehana) maraho from Asia.

| S-EPMC4475787 | biostudies-literature