Browse
Submit Data
Databases
API
Help

Dataset Information

7 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete chloroplast genome of Eria corneri (Orchidaceae).

ABSTRACT: Eria corneri is a perennial epiphytic orchid distributed in southeastern China with high value of ornamental and medicinal. In this study, the complete chloroplast genome sequence of E. corneri was determined from Illumina pair-end sequencing data. The complete chloroplast genome sequence of E. corneri is 150,538 base pairs (bp) in length, including one large single-copy region (LSC, 85,941?bp), one small single-copy region (SSC, 13,099?bp), and a pair of inverted repeat regions (IRs) of 25,749?bp. Besides, the complete chloroplast genome contains 132 genes, including 77 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis showed that E. corneri was most closely related to Calanthe triplicata and Calanthe davidii. Our study provides a foundation for the identification and genotyping of Eria species.

SUBMITTER: Ma SH

PROVIDER: S-EPMC7707674 | biostudies-literature | 2019 Nov

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete chloroplast genome of Eria corneri (Orchidaceae).

Ma Shan-Hu SH Chen Juan J Zhou Jie J Zheng Qing-Dong QD Chen Ming-Kun MK Xie Tai-Xiang TX Ai Ye Y

Mitochondrial DNA. Part B, Resources 20191121 2

Eria corneri is a perennial epiphytic orchid distributed in southeastern China with high value of ornamental and medicinal. In this study, the complete chloroplast genome sequence of E. corneri was determined from Illumina pair-end sequencing data. The complete chloroplast genome sequence of E. corneri is 150,538 base pairs (bp) in length, including one large single-copy region (LSC, 85,941 bp), one small single-copy region (SSC, 13,099 bp), and a pair of inverted repeat reg ...[more]

PMID: 33366355

Similar Datasets

Complete chloroplast genome of Dendrobium thyrsiflorum (Orchidaceae).

Project description:Dendrobium thyrsiflorum H. G. Reichenbach ex André is an endemic herb with ornamental and medicinal orchid value distributed in Southeast of Yunnan of China. Here, we report and characterize the complete chloroplast (cp) genome sequence of D. thyrsiflorum in order to provide genomic resources helpful for its identification, conservation and utilization. The complete cp genome of D. thyrsiflorum is 160,123?bp, including one large single-copy region (LSC, 88,001), one small single-copy region (SSC, 21,142), and two inverted repeat regions (IRs, 25,490). The cp genome contains 143 genes, consisting of 110 unique genes (80 protein-coding genes, 26 tRNAs, and 4 rRNAS). The phlyogenetic relationships show that D. thyrsiflorum is closely related to other species of Dendrobium.

| S-EPMC7707218 | biostudies-literature

Complete chloroplast genome of Cymbidium ensifolium?Orchidaceae?.

Project description:Cymbidium ensifolium is one of the most economical and ornamental significant orchids. It's facing serious genetic resources loss and habitat fragmentation. A conservation strategy is therefore imperative for this endangered orchid. Here, we report on the first complete chloroplast (cp) genome of C. ensifolium. Its full-length of 150,257?bp include large single-copy (LSC) region of 85,110?bp, small single-copy (SSC) region of 13,761?bp, and a pair of invert repeats (IR) regions of 25,692?bp. Plastid genome contain 137 genes, 78 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Cymbidium ensifolium was sister to C. sinense, Cy. Tortisepalum, and C. kanran. The cp genome will help for further research and conservation of C. ensifolium.

| S-EPMC7687436 | biostudies-literature

Complete chloroplast genome of Paphiopedilum emersonii (Orchidaceae).

Project description:Paphiopedilum emersonii is an endemic terrestrial orchid in China. In this study, the chloroplast genome of P. emersonii was determined from BGISEQ-500 sequencing data. The total chloroplast genome was 162,590 bp in length, consisting of a large single-copy region (LSC, 87,852 bp), a small single-copy region (SSC, 870 bp), and two inverted repeat regions (IRA and IRB, 36,934 bp, each). The complete chloroplast genome contains 131 genes, including 81 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. In addition, the phylogenetic analysis indicates that P. emersonii was sister to Paphiopedilum micranthum. The chloroplast genome will contribute to the research and conservation of P. emersonii.

| S-EPMC7783058 | biostudies-literature

The complete chloroplast genome of Dendrobium harveyanum (Orchidaceae).

Project description:Dendrobium harveyanum is an endangered species of Orchidaceae. Here we report the complete chloroplast (cp) genome sequence and the cp genome features of D. harveyanum. The complete cp genome sequence of D. harveyanum is 157,292?bp in length and presented a typical quadripartite structure including one large single-copy region (LSC, 86,583?bp), one small single-copy region (SSC, 19,449?bp), and two inverted repeat regions (IRs, 25,630?bp each). The cp genome encoded 138 genes, of which 120 were unique genes. The phylogenetic relationships show that D. harveyanum is closely related to other species in Dendrobium.

| S-EPMC7707279 | biostudies-literature

The complete chloroplast genome of Paphiopedilum malipoense (Orchidaceae).

Project description:Paphiopedilum malipoense S.C.Chen & Z.H.Tsi is a new orchid species found in Malipo county, Yunnan. Here we report the complete chloroplast (cp) genome sequence and the features of P. malipoense. Its cp genome sequence of P. malipoense is 158,708?bp, including one large single-copy region (LSC, 89,452?bp), one small single-copy region (SSC, 17,692?bp), and two inverted repeat regions (IRs, 25,782?bp). The cp genome encoded 132 genes, of which 112 were unique genes (79 protein-coding genes, 29 tRNAs, and 4 rRNAs). The phylogenetic relationships show that P. malipoense is sister with P. armeniacum-P. wardii.

| S-EPMC7706870 | biostudies-literature

The complete chloroplast genome of Pholidota imbricata (Orchidaceae).

Project description:Pholidota imbricata belongs to tribe Coelogninae in Orchidaceae distributed in Sichuan, Xizang, and Yunnan. Here, we report the first complete chloroplast (cp) genome and the cp genome features of P. imbricata. The complete cp genome sequence of P. imbricata is 159,292?bp in length and presented a typical quadripartite structure including one large single-copy region (LSC, 87,515?bp), one small single-copy region (SSC, 20,999?bp), and two inverted repeat regions (IRs, 25,389?bp each). The cp genome encoded 141 genes, of which 108 were unique genes (80 protein-coding genes, 24 tRNAs, and 4 rRNAs). The phylogenetic relationships show that P. imbricata is sister to the species of the genus Pleione in tribe Coelogninae.

| S-EPMC7707197 | biostudies-literature

The complete chloroplast genome of Cymbidium eburneum (Orchidaceae).

Project description:Cymbidium eburneum Lindl. is an endangered species of Orchidaceae and distributed in Guangxi, Yunnan and Hainan of China, and India, Myanmar, Nepal, Vietnam. Here, we report the complete chloroplast (cp) genome sequence and the cp genome features of C. eburneum. The complete chloroplast (cp) genome sequence of C. eburneum is 156,520?bp in length and presented a typical quadripartite structure including one large single-copy region (LSC, 85,518?bp), one small single-copy region (SSC, 20,014?bp), and two inverted repeat regions (IRs, 25,471?bp). The cp genome encoded 135 genes, of which 106 were unique genes (78 protein-coding genes, 24 tRNAs, and 4 rRNAs). The phylogenetic relationships show that C. eburneum is closely related to other species in the genus Cymbidium, and is sister with C. tracyanum.

| S-EPMC7687489 | biostudies-literature

The complete chloroplast genome of Dendrobium longicornu (Orchidaceae).

Project description:Dendrobium longicornu Lindl is an epiphytic orchid with significant ornamental values. Here, we report the first complete chloroplast genome of D. longicornu. The complete chloroplast (cp) genome sequence of D. longicornu is 160,024?bp in length and consisted of two inverted repeats (IRs, 25,403?bp), which were separated by a large single copy region (LSC, 88,075?bp) and a small single copy region (SSC, 21,143?bp). The cp genome encoded 142 genes, of which 110 were unique genes (80 protein-coding genes, 26 tRNAs and 4 rRNAs). Phylogenetic analysis showed that D. longicornu clustered together with D. ellipsophy.

| S-EPMC7706476 | biostudies-literature

The complete chloroplast genome of Cymbidium changningense (Orchidaceae).

Project description:Cymbidium changningense is an ornamental orchid and endemic specie in China. Here, we report the complete chloroplast (cp) genome sequence and the cp genome features of C. changningense. The cp genome was 155,388?bp in length with a typical quadripartite structure, which was comprised of one large single copy (LSC, 84,522?bp) region and one small single copy (SSC, 20,622?bp) region separated by two inverted repeat (IR, 25,122?bp) regions. The cp genome encoded 132 genes, of which 108 were unique genes (80 protein-coding genes, 24 tRNAs, and four rRNAs). The phylogenetic analysis showed that C. changningense was sister with C. erythraeum.

| S-EPMC7707721 | biostudies-literature

The complete chloroplast genome of Vanilla shenzhenica (Orchidaceae).

Project description:Vanilla shenzhenica Z.J.Liu & S.C.Chen is a new species of orchid found in Shenzhen, South China for the first time. Here we report the complete chloroplast (cp) genome sequence and the features of V. shenzhenica. Its cp genome sequence was 151,537?bp, including one large single-copy region (LSC, 87,487?bp), one small single-copy region (SSC, 19,172?bp), and two inverted repeat regions (IRs, 22,439?bp). It encoded 123 genes, of which 104 were unique genes (69 protein-coding genes, 31 tRNAs and 4 rRNAs). The phylogenetic relationships show that V. shenzhenica is sister with V. aphylla.

| S-EPMC7706789 | biostudies-literature