Dataset Information

ODT Flow Explorer: Extract, Query, and Visualize Human Mobility.

ABSTRACT: Understanding human mobility dynamics among places provides fundamental knowledge regarding their interactive gravity, benefiting a wide range of applications in need of prior knowledge in human spatial interactions. The ongoing COVID-19 pandemic uniquely highlights the need for monitoring and measuring fine-scale human spatial interactions. In response to the soaring needs of human mobility data under the pandemic, we developed an interactive geospatial web portal by extracting worldwide daily population flows from billions of geotagged tweets and United States (U.S.) population flows from SafeGraph mobility data. The web portal is named ODT (Origin-Destination-Time) Flow Explorer. At the core of the explorer is an ODT data cube coupled with a big data computing cluster to efficiently manage, query, and aggregate billions of OD flows at different spatial and temporal scales. Although the explorer is still in its early developing stage, the rapidly generated mobility flow data can benefit a wide range of domains that need timely access to the fine-grained human mobility records. The ODT Flow Explorer can be accessed via http://gis.cas.sc.edu/GeoAnalytics/od.html.

SUBMITTER: Li Z

PROVIDER: S-EPMC7709163 | biostudies-literature | 2020 Nov

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

ODT Flow Explorer: Extract, Query, and Visualize Human Mobility.

Li Zhenlong Z Huang Xiao X Ye Xinyue X Li Xiaoming X

ArXiv 20201126

Understanding human mobility dynamics among places provides fundamental knowledge regarding their interactive gravity, benefiting a wide range of applications in need of prior knowledge in human spatial interactions. The ongoing COVID-19 pandemic uniquely highlights the need for monitoring and measuring fine-scale human spatial interactions. In response to the soaring needs of human mobility data under the pandemic, we developed an interactive geospatial web portal by extracting worldwide daily ...[more]

PMID: 33269301

Similar Datasets

Project description:BACKGROUND:Functional modules in biological networks consist of numerous biomolecules and their complicated interactions. Recent studies have shown that biomolecules in a functional module tend to have similar interaction patterns and that such modules are often conserved across biological networks of different species. As a result, such conserved functional modules can be identified through comparative analysis of biological networks. RESULTS:In this work, we propose a novel network querying algorithm based on the CUFID (Comparative network analysis Using the steady-state network Flow to IDentify orthologous proteins) framework combined with an efficient seed-and-extension approach. The proposed algorithm, CUFID-query, can accurately detect conserved functional modules as small subnetworks in the target network that are expected to perform similar functions to the given query functional module. The CUFID framework was recently developed for probabilistic pairwise global comparison of biological networks, and it has been applied to pairwise global network alignment, where the framework was shown to yield accurate network alignment results. In the proposed CUFID-query algorithm, we adopt the CUFID framework and extend it for local network alignment, specifically to solve network querying problems. First, in the seed selection phase, the proposed method utilizes the CUFID framework to compare the query and the target networks and to predict the probabilistic node-to-node correspondence between the networks. Next, the algorithm selects and greedily extends the seed in the target network by iteratively adding nodes that have frequent interactions with other nodes in the seed network, in a way that the conductance of the extended network is maximally reduced. Finally, CUFID-query removes irrelevant nodes from the querying results based on the personalized PageRank vector for the induced network that includes the fully extended network and its neighboring nodes. CONCLUSIONS:Through extensive performance evaluation based on biological networks with known functional modules, we show that CUFID-query outperforms the existing state-of-the-art algorithms in terms of prediction accuracy and biological significance of the predictions.

Project description:The spatial dynamics of epidemics are fundamentally affected by patterns of human mobility. Mobile phone call detail records (CDRs) are a rich source of mobility data, and allow semi-mechanistic models of movement to be parameterised even for resource-poor settings. While the gravity model typically reproduces human movement reasonably well at the administrative level spatial scale, past studies suggest that parameter estimates vary with the level of spatial discretisation at which models are fitted. Given that privacy concerns usually preclude public release of very fine-scale movement data, such variation would be problematic for individual-based simulations of epidemic spread parametrised at a fine spatial scale. We therefore present new methods to fit fine-scale mathematical mobility models (here we implement variants of the gravity and radiation models) to spatially aggregated movement data and investigate how model parameter estimates vary with spatial resolution. We use gridded population data at 1km resolution to derive population counts at different spatial scales (down to ∼ 5km grids) and implement mobility models at each scale. Parameters are estimated from administrative-level flow data between overnight locations in Kenya and Namibia derived from CDRs: where the model spatial resolution exceeds that of the mobility data, we compare the flow data between a particular origin and destination with the sum of all model flows between cells that lie within those particular origin and destination administrative units. Clear evidence of over-dispersion supports the use of negative binomial instead of Poisson likelihood for count data with high values. Radiation models use fewer parameters than the gravity model and better predict trips between overnight locations for both considered countries. Results show that estimates for some parameters change between countries and with spatial resolution and highlight how imperfect flow data and spatial population distribution can influence model fit.

Dataset Information

ODT Flow Explorer: Extract, Query, and Visualize Human Mobility.

Publications

ODT Flow Explorer: Extract, Query, and Visualize Human Mobility.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets