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The mitochondrial genome of Medetera sp. (Diptera: Dolichopodidae).

ABSTRACT: The long-legged fly Medetera sp. (Genbank accession number: MN604695) belongs to the subfamily Medeterinae of Dolichopodidae. The mitogenome of Medetera sp. was sequenced, the first representative of the mitogenome of the subfamily. The mitogenome is 14,740 bp totally, consisting of 13 protein-coding genes, two rRNAs, and 22 transfer RNAs. All genes have similar locations and strands with that of other published species of Dolichopodidae. The nucleotide composition biases toward A and T, which together made up 67.6％ of the entirety. Bayesian inference analysis strongly supported the monophyly of Dolichopodidae. It suggested that subfamily Medeterinae is the sister group of subfamily Rhaphiinae.

SUBMITTER: Qilemoge

PROVIDER: S-EPMC7720944 | biostudies-literature |

REPOSITORIES: biostudies-literature

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The mitochondrial genome of Argyra pingwuensis (Diptera: Dolichopodidae).

Project description:The long-legged fly Argyra pingwuenesis Qilemoge, Wang et Yang (Genbank accession number: MK905737) belongs to the subfamily Diaphorinae of Dolichopodidae. The mitogenome of A. pingwuenesis was sequenced, the first representative of the mitogenome of the subfamily. The mitogenome is 15,859?bp long, consisting of 13 protein-coding genes, 2 rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Dolichopodidae. The nucleotide composition biases toward A and T, which together made up 74.6% of the entirety. Bayesian inference analysis strongly supported the monophyly of Dolichopodidae. It suggested that subfamily Diaphorinae is the sister group of subfamily Rhaphiinae.

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The mitochondrial genome of Hercostomus brevipilosus (Diptera: Dolichopodidae).

Project description:The long-legged fly Hercostomus brevipilosus (Genbank accession number: MN840034) belongs to the subfamily Dolichopodinae of Dolichopodidae. The mitogenome of H. brevipilosus was sequenced, the first representative of the mitogenome of the genus Hercostomus. The mitogenome is 15,019 bp totally, consisting of 13 protein-coding genes, two rRNAs and 22 transfer RNAs. All genes have similar locations and strands with that of other published species of Dolichopodidae. The nucleotide composition biases toward A and T, which together made up 73.9％ of the entirety. Bayesian inference analysis strongly supported the monophyly of Dolichopodidae and Dolichopodinae. It suggested that Hercostomus is the sister group of Dolichopus.

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The mitochondrial genome of Xanthochlorus tibetensis (Diptera: Dolichopodidae).

Project description:The long-legged fly Xanthochlorus tibetensis belongs to the subfamily Xanthochlorinae of Dolichopodidae. The mitogenome of X. tibetensis was sequenced, it is the first representative complete mitogenome from this subfamily. This mitogenome is 15,580 bp in size, includes 13 protein-coding genes, 22 transfer RNAs, and two ribosomal RNAs. All genes have the same location and coding strand as in other published species of Dolichopodidae. Nucleotide composition is biased toward A and T, which together made up 77.6% of the entire genome. Bayesian inference strongly supported the monophyly of Empidoidea, Empididae and Dolichopodidae, with the phylogenetic relationships within Empidoidea: ((Dolichopodinae + Xanthochlorinae) + Neurigoninae) + ((Trichopezinae + (Empidinae + Oreogetoninae)) + Ocydromiinae).

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The mitochondrial genome of Asyndetus clavipes (Diptera: Dolichopodidae).

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The mitochondrial genome of Lichtwardtia dentalis Zhang, Masunaga et Yang, 2009 (Diptera: Dolichopodidae).

Project description:The long-legged fly Lichtwardtia dentalis Zhang, Masunaga et Yang, 2009 belongs to the subfamily Dolichopodinae of Dolichopodidae. The newly sequenced mitogenome of L. dentalis is a new representative of the subfamily. The nearly complete mitogenome is 15,124 bp in length, consisting of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes (rRNAs), and 22 transfer RNA genes (tRNAs). All genes have similar locations and encoding directions with that of other published mitogenomes of Dolichopodidae. The nucleotide composition biases toward A and T with the overall A + T % is 73.9%. All protein-coding genes initiate with standard start codon ATN except COI and NAD1, and TAA/TAG are conventionally used as stop codons. All tRNAs, ranging from 62 to 71 bp, have a clover-leaf structure. Based on the result of the phylogenetic analysis, Dolichopodidae and Empididae were monophyletic, and the relationships among subfamilies of Dolichopodidae were Diaphorinae + (Peloropeodinae + (Xanthochlorinae + (Medeterinae + Dolichopodinae))). The monophyly of the subfamily Dolichopodinae and the sister relationship between Dolichopus and Lichtwardtia were also strongly supported.

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The mitochondrial genome of Formicosepsis sp. (Diptera: Cypselosomatidae).

Project description:The mitochondrial genome of Formicosepsis sp. was sequenced and annotated as the first representative of family Cypselosomatidae and superfamily Nerioidea. The part mitochondrial genome of Formicosepsis sp. is 15,144?bp totally, consisting of 13 protein-coding genes, two rRNAs, and 22 transfer RNAs, which has a similar gene structure with other published species of Diptera. The nucleotide composition biases toward A and T is 76.4% of the entirety. IQ-tree analysis revealed that the outgroups Anopheles oryzalimnetes and Simulium variegatum diverged from the rest. The Nerioidea represented by Formicosepsis sp. was sister group to Opomyzoidea. The Sciomyzoidea consisting of Sciomyzidae and Sepsidae is a monophyletic clade at the base of Acalyptratae.

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