Dataset Information

Characterization of tissue-specific pre-log Bayesian CT reconstruction by texture-dose relationship.

ABSTRACT: Purpose: Tissue textures have been recognized as biomarkers for various clinical tasks. In computed tomography (CT) image reconstruction, it is important but challenging to preserve the texture when lowering x-ray exposure from full- toward low-/ultra-low dose level. Therefore, this paper aims to explore the texture-dose relationship within one tissue-specific pre-log Bayesian CT reconstruction algorithm.

Methods: To enhance the texture in ultra-low dose CT (ULdCT) reconstruction, this paper presents a Bayesian type algorithm. A shifted Poisson model is adapted to describe the statistical properties of pre-log data, and a tissue-specific Markov random field prior (MRFt) is used to incorporate tissue texture from previous full-dose CT, thus called SP-MRFt algorithm. Utilizing the SP-MRFt algorithm, we investigated tissue texture degradation as a function of x-ray dose levels from full dose (100 mAs/120 kVp) to ultralow dose (1 mAs/120 kVp) by using quantitative texture-based evaluation metrics.

Results: Experimental results show the SP-MRFt algorithm outperforms conventional filtered back projection (FBP) and post-log domain penalized weighted least square MRFt (PWLS-MRFt) in terms of noise suppression and texture preservation. Comparable results are also obtained with shifted Poisson model with 7 × 7 Huber MRF weights (SP-Huber7). The investigation on texture-dose relationship shows that the quantified texture measures drop monotonically as dose level decreases, and interestingly a turning point is observed on the texture-dose response curve.

Conclusions: This important observation implies that there exists a minimum dose level, at which a given CT scanner (hardware configuration and image reconstruction software) can achieve without compromising clinical tasks. Moreover, the experiment results show that the variance of electronic noise has higher impact than the mean to the texture-dose relationship.

SUBMITTER: Gao Y

PROVIDER: S-EPMC7721985 | biostudies-literature | 2020 Oct

REPOSITORIES: biostudies-literature

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Characterization of tissue-specific pre-log Bayesian CT reconstruction by texture-dose relationship.

Gao Yongfeng Y Liang Zhengrong Z Xing Yuxiang Y Zhang Hao H Pomeroy Marc M Lu Siming S Ma Jianhua J Lu Hongbing H Moore William W

Medical physics 20200905 10

<h4>Purpose</h4>Tissue textures have been recognized as biomarkers for various clinical tasks. In computed tomography (CT) image reconstruction, it is important but challenging to preserve the texture when lowering x-ray exposure from full- toward low-/ultra-low dose level. Therefore, this paper aims to explore the texture-dose relationship within one tissue-specific pre-log Bayesian CT reconstruction algorithm.<h4>Methods</h4>To enhance the texture in ultra-low dose CT (ULdCT) reconstruction, t ...[more]

PMID: 32786070

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Project description:PurposeComputed tomography (CT) is one of the most used imaging modalities for imaging both symptomatic and asymptomatic patients. However, because of the high demand for lower radiation dose during CT scans, the reconstructed image can suffer from noise and artifacts due to the trade-off between the image quality and the radiation dose. The purpose of this paper is to improve the image quality of quarter dose images and to select the best hyperparameters using the regular dose image as ground truth.MethodsWe first generated the axially stacked two-dimensional sinograms from the multislice raw projections with flying focal spots using a single slice rebinning method, which is an axially approximate method to provide simple implementation and efficient memory usage. To improve the image quality, a cost function containing the Poisson log-likelihood and spatially encoded nonlocal penalty is proposed. Specifically, an ordered subsets separable quadratic surrogates (OS-SQS) method for the log-likelihood is exploited and the patch-based similarity constraint with a spatially variant factor is developed to reduce the noise significantly while preserving features. Furthermore, we applied the Nesterov's momentum method for acceleration and the diminishing number of subsets strategy for noise consistency. Fast nonlocal weight calculation is also utilized to reduce the computational cost.ResultsDatasets given by the Low Dose CT Grand Challenge were used for the validation, exploiting the training datasets with the regular and quarter dose data. The most important step in this paper was to fine-tune the hyperparameters to provide the best image for diagnosis. Using the regular dose filtered back-projection (FBP) image as ground truth, we could carefully select the hyperparameters by conducting a bias and standard deviation study, and we obtained the best images in a fixed number of iterations. We demonstrated that the proposed method with well selected hyperparameters improved the image quality using quarter dose data. The quarter dose proposed method was compared with the regular dose FBP, quarter dose FBP, and quarter dose l1 -based 3-D TV method. We confirmed that the quarter dose proposed image was comparable to the regular dose FBP image and was better than images using other quarter dose methods. The reconstructed test images of the accreditation (ACR) CT phantom and 20 patients data were evaluated by radiologists at the Mayo clinic, and this method was awarded first place in the Low Dose CT Grand Challenge.ConclusionWe proposed the iterative CT reconstruction method using a spatially encoded nonlocal penalty and ordered subsets separable quadratic surrogates with the Nesterov's momentum and diminishing number of subsets. The results demonstrated that the proposed method with fine-tuned hyperparameters can significantly improve the image quality and provide accurate diagnostic features at quarter dose. The performance of the proposed method should be further improved for small lesions, and a more thorough evaluation using additional clinical data is required in the future.

Project description:ObjectiveFew studies have explored the clinical feasibility of using deep-learning reconstruction to reduce the radiation dose of CT. We aimed to compare the image quality and lung nodule detectability between chest CT using a quarter of the low dose (QLD) reconstructed with vendor-agnostic deep-learning image reconstruction (DLIR) and conventional low-dose (LD) CT reconstructed with iterative reconstruction (IR).Materials and methodsWe retrospectively collected 100 patients (median age, 61 years [IQR, 53-70 years]) who received LDCT using a dual-source scanner, where total radiation was split into a 1:3 ratio. QLD CT was generated using a quarter dose and reconstructed with DLIR (QLD-DLIR), while LDCT images were generated using a full dose and reconstructed with IR (LD-IR). Three thoracic radiologists reviewed subjective noise, spatial resolution, and overall image quality, and image noise was measured in five areas. The radiologists were also asked to detect all Lung-RADS category 3 or 4 nodules, and their performance was evaluated using area under the jackknife free-response receiver operating characteristic curve (AUFROC).ResultsThe median effective dose was 0.16 (IQR, 0.14-0.18) mSv for QLD CT and 0.65 (IQR, 0.57-0.71) mSv for LDCT. The radiologists' evaluations showed no significant differences in subjective noise (QLD-DLIR vs. LD-IR, lung-window setting; 3.23 ± 0.19 vs. 3.27 ± 0.22; P = .11), spatial resolution (3.14 ± 0.28 vs. 3.16 ± 0.27; P = .12), and overall image quality (3.14 ± 0.21 vs. 3.17 ± 0.17; P = .15). QLD-DLIR demonstrated lower measured noise than LD-IR in most areas (P < .001 for all). No significant difference was found between QLD-DLIR and LD-IR for the sensitivity (76.4% vs. 72.2%; P = .35) or the AUFROCs (0.77 vs. 0.78; P = .68) in detecting Lung-RADS category 3 or 4 nodules. Under a noninferiority limit of -0.1, QLD-DLIR showed noninferior detection performance (95% CI for AUFROC difference, -0.04 to 0.06).ConclusionQLD-DLIR images showed comparable image quality and noninferior nodule detectability relative to LD-IR images.

Project description:BackgroundDeep learning has been successfully applied to low-dose CT (LDCT) denoising. But the training of the model is very dependent on an appropriate loss function. Existing denoising models often use per-pixel loss, including mean abs error (MAE) and mean square error (MSE). This ignores the difference in denoising difficulty between different regions of the CT images and leads to the loss of large texture information in the generated image.PurposeIn this paper, we propose a new hybrid loss function that adapts to the noise in different regions of CT images to balance the denoising difficulty and preserve texture details, thus acquiring CT images with high-quality diagnostic value using LDCT images, providing strong support for condition diagnosis.MethodsWe propose a hybrid loss function consisting of weighted patch loss (WPLoss) and high-frequency information loss (HFLoss). To enhance the model's denoising ability of the local areas which are difficult to denoise, we improve the MAE to obtain WPLoss. After the generated image and the target image are divided into several patches, the loss weight of each patch is adaptively and dynamically adjusted according to its loss ratio. In addition, considering that texture details are contained in the high-frequency information of the image, we use HFLoss to calculate the difference between CT images in the high-frequency information part.ResultsOur hybrid loss function improves the denoising performance of several models in the experiment, and obtains a higher peak signal-to-noise ratio (PSNR) and structural similarity index (SSIM). Moreover, through visual inspection of the generated results of the comparison experiment, the proposed hybrid function can effectively suppress noise and retain image details.ConclusionsWe propose a hybrid loss function for LDCT image denoising, which has good interpretation properties and can improve the denoising performance of existing models. And the validation results of multiple models using different datasets show that it has good generalization ability. By using this loss function, high-quality CT images with low radiation are achieved, which can avoid the hazards caused by radiation and ensure the disease diagnosis for patients.

Project description:The purpose of this study was to compare the measurement-derived (3DVH) dose reconstruction method with machine log file-derived dose reconstruction method in patient geometries for VMAT delivery. A total of ten patient plans were selected from a regular fractionation plan to complex SBRT plans. Treatment sites in the lung and abdomen were chosen to explore the effects of tissue heterogeneity on the respective dose reconstruction algorithms. Single- and multiple-arc VMAT plans were generated to achieve the desired target objectives. Delivered plan in the patient geometry was reconstructed by using ArcCHECK Planned Dose Perturbation (ACPDP) within 3DVH software, and by converting the machine log file to Pinnacle3 9.0 treatment plan format and recalculating dose with CVSP algorithm. In addition, delivered gantry angles between machine log file and 3DVH 4D measurement were also compared to evaluate the accuracy of the virtual inclinometer within the 3DVH. Measured ion chamber and 3DVH-derived isocenter dose agreed with planned dose within 0.4% ± 1.2% and -1.0% ± 1.6%, respectively. 3D gamma analysis showed greater than 98% between log files and 3DVH reconstructed dose. Machine log file reconstructed doses and TPS dose agreed to within 2% in PTV and OARs over the entire treatment. 3DVH reconstructed dose showed an average maximum dose difference of 3% ± 1.2% in PTV, and an average mean difference of -4.5% ± 10.5% in OAR doses. The average virtual inclinometer error (VIE) was -0.65° ± 1.6° for all patients, with a maximum error of -5.16° ± 4.54° for an SRS case. The time averaged VIE was within 1°-2°, and did not have a large impact on the overall accuracy of the estimated patient dose from ACPDP algorithm. In this study, we have compared two independent dose reconstruction methods for VMAT QA. Both methods are capable of taking into account the measurement and delivery parameter discrepancy, and display the delivered dose in CT patient geometry rather than the phantom geometry. The dose discrepancy can be evaluated in terms of DVH of the structures and provides a more intuitive understanding of the dosimetric impact of the delivery errors on the target and normal structure dose.

Project description:Background Results of recent phantom studies show that variation in CT acquisition parameters and reconstruction techniques may make radiomic features largely nonreproduceable and of limited use for prognostic clinical studies. Purpose To investigate the effect of CT radiation dose and reconstruction settings on the reproducibility of radiomic features, as well as to identify correction factors for mitigating these sources of variability. Materials and Methods This was a secondary analysis of a prospective study of metastatic liver lesions in patients who underwent staging with single-energy dual-source contrast material-enhanced staging CT between September 2011 and April 2012. Technique parameters were altered, resulting in 28 CT data sets per patient that included different dose levels, section thicknesses, kernels, and reconstruction algorithm settings. By using a training data set (n = 76), reproducible intensity, shape, and texture radiomic features (reproducibility threshold, R2 ≥ 0.95) were selected and correction factors were calculated by using a linear model to convert each radiomic feature to its estimated value in a reference technique. By using a test data set (n = 75), the reproducibility of hierarchical clustering based on 106 radiomic features measured with different CT techniques was assessed. Results Data in 78 patients (mean age, 60 years ± 10; 33 women) with 151 liver lesions were included. The percentage of radiomic features deemed reproducible for any variation of the different technical parameters was 11% (12 of 106). Of all technical parameters, reconstructed section thickness had the largest impact on the reproducibility of radiomic features (12.3% [13 of 106]) if only one technical parameter was changed while all other technical parameters were kept constant. The results of the hierarchical cluster analysis showed improved clustering reproducibility when reproducible radiomic features with dedicated correction factors were used (ρ = 0.39-0.71 vs ρ = 0.14-0.47). Conclusion Most radiomic features are highly affected by CT acquisition and reconstruction settings, to the point of being nonreproducible. Selecting reproducible radiomic features along with study-specific correction factors offers improved clustering reproducibility. © RSNA, 2019 Online supplemental material is available for this article. See also the editorial by Sosna in this issue.

Dataset Information

Characterization of tissue-specific pre-log Bayesian CT reconstruction by texture-dose relationship.

Publications

Characterization of tissue-specific pre-log Bayesian CT reconstruction by texture-dose relationship.

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