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Complete mitochondrial DNA sequence of the parasitic honey bee mite Varroa destructor (Mesostigmata: Varroidae).

ABSTRACT: Varroa destructor is a parasite mite of the eastern honey bee Apis cerana, which is native to Asia. The European honey bee Apis mellifera was imported to Asia from Europe and the USA for apiculture in the 19th century. In a short period of time, V. destructor parasitized the artificially introduced honey bees. Varroa destructor was estimated to have spread around the world with A. mellifera when it was exported from Asia to locations worldwide about 50 years ago. The mitochondrial DNA of the parasitic honey bee mite V. destructor was analyzed using next-generation sequencing. The complete mitochondrial genome of V. destructor was identified as a 16,476-bp circular molecule containing 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and one AT-rich control region. The heavy strand was predicted to have nine PCGs and 13 tRNA genes, whereas the light strand was predicted to contain four PCGs, nine tRNA genes, and two rRNA genes. All PCGs began with ATA as the start codon, except COIII and CytB, which had ATG as the start codon. Stop codons were of two types: TAA for eight genes and TAG for five genes. Molecular phylogenetic analysis revealed that V. destructor from Japan was genetically distant from that of France. A high base substitution rate of 2.82% was also confirmed between the complete mitochondrial DNA sequences of V. destructor from Japan and the USA, suggesting that one Varroa mite strain found in the USA is not from Japan.

SUBMITTER: Harada R

PROVIDER: S-EPMC7748463 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Project description:The Modern beekeeping industry is being challenged by the varroan mite and its transmitted pathogens. Various types of Varroa destructor exhibit different levels of virulence toward honey bees, but only the Japanese (J) and Russian (R) types were found to infect Apis mellifera. Type R was more highly virulent against A. mellifera in comparison with type J. Examining the genetic profile of Varroa species is therefore of crucial importance in apiary management. In this study, maternally inherited mitochondrial cytochrome oxidase I (COI) and bisexual nuclear internal transcribed spacer (ITS) sequences of V. destructor individuals from Taiwan were determined. All 168 COI sequences observed in populations obtained from A. mellifera were identical and belonged to type J, with one base difference to that of populations collected from A. cerana; the new type is named 'T type' (Taiwan type). ITS sequences of V. destructor and its sister species V. jacobsoni were identical. A network analysis based on 611 COI sequences compiled from references indicated the presence of 27 haplotypes in V. destructor. Epidemic history and relationship analyses of V. destructor showed that the basal haplotypes were those from A. cerana and many R-extending haplotypes infesting A. mellifera involving amino acid substitutions. Calibration dating based on COI analysis revealed that V. destructor differentiated from its sibling lineage (occurring in Sri Lanka) prior to 1.3 million years ago (Mya). The ancestral haplotype retention and drift in V. destructor that occurred locally during 0.10-0.64 Mya might be relevant to its host A. cerana, which had been isolated geologically. The highly virulent type R was spreading quickly and could gradually outcompete the common and less virulent type J. Type T, being intermediate between types R and J, ought to be studied to better understand the pathogenic mechanism of V. destructor in A. mellifera. Moreover, for areas where type R does not occur, such as Taiwan, quarantine requirements are crucial for reducing invasion risks.

Dataset Information

Complete mitochondrial DNA sequence of the parasitic honey bee mite Varroa destructor (Mesostigmata: Varroidae).

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