Browse
Submit Data
Databases
API
Help

Dataset Information

16 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sequencing and characterization of mitochondrial genome of Idaea effusaria (Lepidoptera: Geometridae).

ABSTRACT: The Idaea effusaria belongs to Geometridae in Lepidoptera. The complete mitogenome of I. effusaria was described in this study, which is typically circular duplex molecules and 16,161 bp in length, containing the standard metazoan set of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and an A + T-rich region. The gene order is same with other lepidopterans. Except for cox1 started with CGA, all other PCGs started with the standard ATN codons. Most of the PCGs terminated with the stop codon TAA, whereas cox2 has the stop codon CAT. The phylogenetic tree showed that Larentiinae is close to Sterrhinae. The species of Ennominae form a monophyly.

SUBMITTER: Xie JL

PROVIDER: S-EPMC7748719 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Characterization of the complete mitochondrial genome of Ectropis grisescens (Lepidoptera, Geometridae).

Project description:Ectropis grisescens (Lepidoptera, Geometridae) is one of the main leaf-eating pests in tea plantations in China. In this study, the complete mitochondrial genome of this species was sequenced and assembled. The total length of the mitochondrial genome of E. grisescens was 15,794 bp (GenBank accession No. MW337302). The base composition was 41.26% for A, 39.49% for T, 7.92% for G, and 11.33% for C. The circular mitogenome contained 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes. Phylogenetic analysis performed using 13 protein-coding genes of 15 species of Geometridae and an out-group Pieris melete (Lepidoptera, Pieridae) showed that E. grisescens is closely related to species of E. obliqua, and this is consistent with the morphological identification.

| S-EPMC8205040 | biostudies-literature

Complete mitochondrial genome of Biston thoracicaria (Lepidoptera: Geometridae).

Project description:The complete mitochondrial genome (mitogenome) of Biston thoracicaria (Lepidoptera: Geometridae) is 15,538 bp in length, containing 13 PCGs, 22 tRNAs, two rRNAs, and an A + T-rich region. All PCGs initiate with typical start codon of ATN and share the complete stop codon of TAA, whereas cox1 starts with CGA. The ML analysis was performed using a dataset matrix containing 13 PCGs concatenated from the mitogenomes of Geometridae species. Our study presented the phylogenetic relationship of (Larentiinae + ((Sterrhinae + (Ennominae + Geometrinae))). Within the genera Biston, B. thoracicaria grouped with other species as the sister group.

| S-EPMC8216253 | biostudies-literature

The mitochondrial genome of Erannis ankeraria (Lepidoptera: Geometridae).

Project description:The measuring worm Erannis ankeraria belongs to the subfamily Ennominae of Geometridae. The mitogenome (GenBank accession number: MN046105) of E. ankeraria was sequenced, the new representative of the mitogenome of the subfamily. The nearly complete mitogenome is 15,250 bp totally, consisting of 13 protein-coding genes, two rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Geometridae. The nucleotide composition biases towards A and T, which together made up 79.3% of the entirety. Bayesian inference analysis strongly supported the monophyly of Bombycoidea, Geometroidea, Noctuoidea, Papilionoidea, Pyraloidea, and Tortricoidea were strongly supported. This result also suggested that the Geometroidea was the sister to Bombycoidea, and then Noctuoidea was assigned to the sister group to the clade of Geometroidea + Bombycoidea, and then Pyraloidea was the sister group to the clade that contains Geometroidea, Bombycoidea, and Noctuoidea, and then Papilionoidea was the sister group to the clade that contains these four superfamilies mentioned above.

| S-EPMC7706540 | biostudies-literature

Phylogenetic relationship and characterization of the complete mitochondrial genome of Milionia basalis (Lepidoptera: Geometridae).

Project description:Larvae of the geometrid moth Milionia basalis feed exclusively on the podocarp tree, Podocarpus macrophyllus. In this study, we sequenced and analyzed the complete mitochondrial genome (mitogenome) of M. basalis. This mitogenome was 15,901?bp long and encoded 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and two ribosomal RNA unit genes (rRNAs). The whole mitogenome exhibited heavy AT nucleotide bias (82.2%). Gene order was conserved and identical to most other previously sequenced Geometridae. Most PCGs of M. basalis had the conventional start codons ATN, with the exception of nad1 (TTG) and cox1 (CGA). Except for four genes (cox1, cox2, nad5, and nad4) end with the incomplete stop codon T--, all other PCGs terminated with the stop codon TAA. Phylogenetic analysis showed that M. basalis got together with Apocheima cinerarius, Jankowskia athlete, and four Biston species (B. panterinaria, B. perclara, B. suppressaria, and B. thibetaria).

| S-EPMC7707798 | biostudies-literature

The complete mitochondrial genome of a tea geometrid, Ectropis obliqua (Lepidoptera: Geometridae).

Project description:The tea geometrid, Ectropis obliqua Prout (Lepidoptera: Geometridae), is a major pest of tea plantation and poses a considerable economic threat to tea industry. We have sequenced the complete mitochondrial genome of E. obliqua. The entire genome is 16,535 bp in length with an A + T content of 81.32% (GenBank accession No. KX827002). The tea geometrid mt genome encodes all 37 genes that are typically found in animal mt genomes, consists of 13 protein-coding genes (PCG), two ribosomal RNA genes, and 22 transfer RNA genes. The gene order is consistent with other sequenced mt genome of moths and butterflies in Ditrysia. The A + T-rich region is 1523 bp long and consisting of the motif 'ATAGA', a 19 bp poly-T stretch, and a tandem repeat sequence with seven 194 bp repeat units. Phylogenetic analysis was performed using 13 PCG with 16 moths showed that E. obliqua clusters with other Geometridae species.

| S-EPMC7800479 | biostudies-literature

Geometrid caterpillar in Eocene Baltic amber (Lepidoptera, Geometridae).

Project description:Lepidoptera have little fossilization potential due to the presence of delicate structures and hence are exceptional findings, even in ambers that allow their preservation in sufficient detail for interpretation. From Eocene Baltic amber, the volumetrically largest known deposit of amber, there has been no reliable report of any member of the Macrolepidoptera (informal group of higher moths and all butterflies). Any such lepidopteran fossil would provide insight into evolutionary processes during the Eocene, long after flowering plants had completed their initial radiation. Here, we report on a first geometrid caterpillar from Baltic amber which is described as the oldest evidence for the subfamily Ennominae (tribe Boarmiini) and as one of the oldest records of the currently mega-diverse family. The new finding provides an important calibration point for molecular clock analyses within the family Geometridae and predates the basal divergence of Boarmiini from 32-38 to 44 Mya. It also predates the occurrence of this highly specialized form of caterpillar locomotion that allows for rapid movement.

| S-EPMC6868187 | biostudies-literature

Rhodostrophia crypta, a new species from Middle Asia (Lepidoptera: Geometridae).

Project description:Background:Rhodostrophia is a speciose genus which is widespread in arid landscapes of Central Asia. New information:A new species, Rhodostrophia crypta sp. n. is described below from Kazakhstan.

| S-EPMC7239953 | biostudies-literature

A new Stamnodes from the southwestern United States (Lepidoptera, Geometridae, Larentiinae).

Project description:Stamnodes fergusoni sp. nov. occurs from extreme southeastern Arizona through southern New Mexico east into western Texas, USA. Identity of the new species can be reliably determined by external features, genitalic characters, and COI haplotypes. Larvae are believed to be specialists on Salvia pinguifolia and S. ballotiflora. The adult and larval stages and male and female genitalia are illustrated, available DNA barcode data that support the recognition of the new Stamnodes are reviewed, and its life history briefly characterized.

| S-EPMC7142163 | biostudies-literature

A new macrolepidopteran moth (Insecta, Lepidoptera, Geometridae) in Miocene Dominican amber.

Project description:A new genus and species of fossil moth, Miogeometrida chunjenshihi Zhang, Shih & Shih, gen. et sp. nov., assigned to Geometridae, is described from Miocene Dominican amber dating from 15-20 Mya. The new genus is characterized by the forewing without a fovea, R1 not anastomosing with Sc, no areole formed by veins R1 and Rs, R1 and Rs1 completely coincident, M2 arising midway between M1 and M3, anal veins 1A and 2A fused for their entire lengths; and the hind wing with Rs running close to Sc + R1 and M2 absent.

| S-EPMC7483395 | biostudies-literature

Characterization of the complete mitochondrial genome of the giant silkworm moth, Eriogyna pyretorum (Lepidoptera: Saturniidae).

Project description:The complete mitochondrial genome (mitogenome) of Eriogyna pyretorum (Lepidoptera: Saturniidae) was determined as being composed of 15,327 base pairs (bp), including 13 protein-coding genes (PCGs), 2 rRNA genes, 22 tRNA genes, and a control region. The arrangement of the PCGs is the same as that found in the other sequenced lepidopteran. The AT skewness for the E. pyretorum mitogenome is slightly negative (-0.031), indicating the occurrence of more Ts than As. The nucleotide composition of the E. pyretorum mitogenome is also biased toward A + T nucleotides (80.82%). All PCGs are initiated by ATN codons, except for cytochrome c oxidase subunit 1 and 2 (cox1 and cox2). Two of the 13 PCGs harbor the incomplete termination codon by T. All tRNA genes have a typical clover-leaf structure of mitochondrial tRNA, with the exception of trnS1(AGN) and trnS2(UCN). Phylogenetic analysis among the available lepidopteran species supports the current morphology-based hypothesis that Bombycoidea, Geometroidea, Notodontidea, Papilionoidea and Pyraloidea are monophyletic. As has been previously suggested, Bombycidae (Bombyx mori and Bombyx mandarina), Sphingoidae (Manduca sexta) and Saturniidae (Antheraea pernyi, Antheraea yamamai, E. pyretorum and Caligula boisduvalii) formed a group.

| S-EPMC2686093 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data