Comparing Circadian Rhythmicity in the Human Gut Microbiome.
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ABSTRACT:
SUBMITTER: Reitmeier S
PROVIDER: S-EPMC7757335 | biostudies-literature | 2020 Dec
REPOSITORIES: biostudies-literature
Publications
Comparing Circadian Rhythmicity in the Human Gut Microbiome.
Reitmeier Sandra S Kiessling Silke S Neuhaus Klaus K Haller Dirk D
STAR protocols 20201026 3
Targeted sequencing of 16S rRNA genes enables the analysis of microbiomes. Here, we describe a protocol for the collection, storage, and preparation of fecal samples. We describe how we cluster similar sequences and assign bacterial taxonomies. Using diversity analysis and machine learning, we can extract disease-associated features. We also describe a circadian analysis to identify the presence or absence of rhythms in taxonomies. Differences in rhythmicity between cohorts can contribute to det ...[more]
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