Browse
Submit Data
Databases
API
Help

Dataset Information

24 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Next-generation sequencing of the complete mitochondrial genome of the Nixi chicken (Gallus gallus).

ABSTRACT: Nixi chicken is a type of Tibetan chickens who lives at high altitudes in China. In this study, we reported the first complete mitochondrial genome of Nixi chicken by using a next-generation sequencing method. The assembled complete mitogenome contains one control region, 2 ribosomal RNAs, 13 protein-coding genes and 22 transfer RNA genes. Our work provides a valuable source of data for the study of the evolution of the Gallus gallus mitochondrial genome and contributes to the Nixi chicken breeding improvement program.

SUBMITTER: Gu J

PROVIDER: S-EPMC7781923 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Next-generation sequencing of the complete mitochondrial genome of the Piao chicken (Gallus gallus).

Project description:In this study, the complete mitochondrial genome sequence of Piao chicken (Gallus gallus) was obtained by using the next-generation sequencing method for the first time. The complete mitogenome sequence of Piao chicken contains 2 ribosomal RNAs, 13 protein-coding genes, 22 transfer RNA genes and a D-loop region. This study serves as a valuable genetic resource for mitochondrial studies and can be used in understanding the maternal lineages of native chickens.

| S-EPMC7781869 | biostudies-literature

Next-generation sequencing yields the complete mitogenome of Niya chicken (Gallus gallus).

Project description:In this study, the complete mitochondrial genome sequence of Niya chicken (Gallus gallus) was obtained by using the next-generation sequencing technology for the first time. The complete mitogenome sequence of Niya chicken is 16,784 bp in length, containing 2 ribosomal RNAs, 13 protein-coding genes, 22 transfer RNA genes and a D-loop region. Our work provides a valuable source of data for phylogenetic studies and helps us to understand the maternal origins of the native chickens.

| S-EPMC7782777 | biostudies-literature

The complete mitogenome of Qingyuan chicken (Gallus gallus) by next-generation sequencing and phylogenetic analysis.

Project description:In this study, the complete mitochondrial genome sequence of the Qingyuan chicken (Gallus gallus) was reported for the first time by using the high-throughput sequencing technology. The complete mitogenome sequence of Qingyuan chicken exhibits a typical genetic structure of vertebrate double-strands circular genome, containing a D-loop region, 2 ribosomal RNA genes, 13 protein-coding genes and 22 transfer RNA genes. Our work provides a source of useful data for mitochondrial researches and chicken phylogenetic studies.

| S-EPMC7783063 | biostudies-literature

The complete mitochondrial genome of the Luhua chicken (Gallus gallus).

Project description:The Luhua chicken is one of the excellent Chinese local chicken breeds. The first complete mitochondrial genome of Luhua chicken was assembled by using next generation sequencing method. The complete mitogenome contains one control region, 2 ribosomal RNAs, 13 protein-coding genes and 22 transfer RNA genes. This work provides a valuable resource for the mitochondrial research and contributes to genetic improvement of domestic chicken.

| S-EPMC7783154 | biostudies-literature

Complete mitochondrial genome of the Longsheng Feng chicken (Gallus gallus).

Project description:In this study, the complete mitochondrial genome of Longsheng Feng chicken (Gallus gallus) was obtained by using a next-generation sequencing method for the first time. The complete mitochondrial genome sequence of Longsheng Feng chicken contains 2 ribosomal RNAs, 13 protein-coding genes, 22 transfer RNA genes and one control region. This work provides valuable genetic data for chicken mitochondrial researches and phylogenetic studies of domestic chickens.

| S-EPMC7781991 | biostudies-literature

The complete mitochondrial genome of Huainan partridge chicken (Gallus gallus).

Project description:Huainan Partridge chicken is one of the indigenous chicken breeds in China. In this study, the first complete mitochondrial DNA (mtDNA) sequence of Huainan Partridge chicken had been obtained using PCR amplification, sequencing and assembling. The mitogenome of Huainan Partridge chicken is 16785 bp in length, including a control region (D-loop), 13 protein-coding genes, 22 transfer genes and 2 ribosomal genes. The base composition of the complete mtDNA sequence is 30.27% for A, 23.73% for T, 13.50%for G, 32.50% for C. This study will provide reference for the phylogenetic analysis of Huainan Partridge chicken.

| S-EPMC7832493 | biostudies-literature

The complete mitochondrial genome and phylogenetic analysis of the Hetian chicken (Gallus gallus).

Project description:In this study, the complete mitochondrial genome of Hetian chicken (Gallus gallus) was obtained by using next generation sequencing method. The total length of complete mitogenome sequence is 16,784 bp, containing one control region, 2 ribosomal RNAs, 13 protein-coding genes and 22 transfer RNA genes. This work provides a valuable source of data for the study of the evolution of Gallus gallus mitochondrial genome and contributes to Hetian chicken breeding improvement program.

| S-EPMC7782330 | biostudies-literature

The complete mitochondrial genome sequence of Zhuanghe Big-boned chicken (Gallus gallus).

Project description:In this study, the complete mitochondrial genome of Zhuanghe Big-boned chicken (Gallus gallus) was obtained by using next generation sequencing method. The complete mitogenome sequence is 16,784 bp in length, containing 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNA genes, and one control region. This work provides a valuable source of data for the study of the evolution of Gallus gallus mitochondrial genome.

| S-EPMC7782231 | biostudies-literature

Complete mitochondrial genome and phylogenetic analysis of Huangshan Black chicken (Gallus gallus).

Project description:In this study, we sequenced the complete mitochondrial genome (mitogenome) of the Huangshan Black chicken (HBC). Results showed that the complete HBC mitogenome was 16,785 bp in size, comprising 22 transfer RNA genes, 2 ribosomal RNA genes, 13 protein-coding genes, and 1 non-coding control region (D-loop). The overall nucleotide composition was 32.5% for C, 30.3% for A, 23.7% for T, and 13.5% for G. Phylogenetic analysis showed that the HBC mitogenome was clustered with Xianju chicken, which belonged to the haplogroup D2. Our results therefore demonstrate that the origin of HBC corresponds to haplogroup D2 distribution and might have at least one maternal lineage originated from Southeast Asia.

| S-EPMC7872527 | biostudies-literature

The complete mitochondrial genome sequence of Lindian Chicken (Gallus gallus) in China.

Project description:In this study, the first complete mitochondrial genome of Lindian Chicken (Gallus gallus) was sequenced in order to develop the mitogenome data for genus gallus. The complete mitogenome sequence is 16,785 bp in length, containing 37 genes (13 protein-coding genes, 2 ribosomal RNA, 22 transfer RNA genes, and one control region). The new sequenced complete mitogenome of Lindian Chicken will provide useful information for application in conservation genetics and evolution for this Near Threatened Chicken genomes.

| S-EPMC7800424 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data