Browse
Submit Data
Databases
API
Help

Dataset Information

12 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome of Sarcophaga scopariiformis (Diptera: Sarcophagidae).

ABSTRACT: Sarcophaga scopariiformis (Diptera: Sarcophagidae), a potential vector of pathogens as well as one of the important flesh fly specie in forensic entomology. We have firstly sequenced and assembled the whole mitogenome of S. scopariiformis in this study. The circular mitogenome is 15,325 bp in length, consisting of A (39.3%), G (9.4%), T (36.8%), and C (14.5%). It showed in a typical mitochondrial genome similar to other sarcophagids species, which is composed of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNA), 2 ribosomal RNA genes (rRNA), and a non-coding AT-rich region. Moreover, the phylogenetic analysis based on 13 PCGs has been conducted. The topological structure of the phylogenetic tree clearly indicated that S. scopariiformis was more closed to the species of Sarcophaga peregrina in genetic distance, compared to the other sarcophagids species. This study provided a useful data reference for genetic structure and phylogenetic analysis of Sarcophagidae.

SUBMITTER: Wang W

PROVIDER: S-EPMC7782300 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

The complete mitochondrial genome of Sarcophaga caudagalli (Diptera: Sarcophagidae).

Project description:Sarcophaga caudagalli belonging to the Sarcophagidae is significant for medical and veterinary management. The complete mitochondrial genome (mitogenome) of S. caudagalli was first sequenced and annotated. The circular molecule was 15,029?bp in length, containing 37 genes (13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA genes, and an A?+?T-rich region). Phylogenetic analysis showed that the clade of S. caudagalli was clustered separately.

| S-EPMC7706462 | biostudies-literature

The complete mitochondrial genome of Sarcophaga brevicornis (Diptera: Sarcophagidae).

Project description:Sarcophaga brevicornis (Diptera: Sarcophagidae) was of utmost forensic importance due to their wide distribution, ubiquitous, and synanthropic nature. The complete mitochondrial genome (mitogenome) of S. brevicornis was first sequenced and assembled in this study. The length of circular mitogenome was 15,152?bp, which showed in a typical arthropod genome, including 13 protein-coding genes (13 PCGs), two ribosomal RNA (two rRNA) genes, 22 transfer RNA (22 tRNA) genes, and an AT-rich region. Its nucleotide composition was A 39.0%, C 12.7%, G 10.6%, and T 37.7%. Furthermore, phylogenetic relationships of S. brevicornis and the published sarcophagid species were evaluated based on 13 PCGs. The results indicated that S. brevicornis was clearly separated from the other sarcophagid species, but it was closed to the species of Sarcophaga similis. This study provided a significant database reference for genetic structure and phylogenetic analysis of Sarcophagidae.

| S-EPMC7706719 | biostudies-literature

The complete mitochondrial genome of Sarcophaga pterygota (Diptera: Sarcophagidae).

Project description:Sarcophaga pterygota (Diptera: Sarcophagidae) plays a crucial role in medical and veterinary management. The complete mitochondrial genome (mitogenome) of S. pterygota was first sequenced and annotated. The circle DNA is composed of 13 protein-coding genes (13 PCGs), 2 ribosomal RNA (2 rRNAs), 22 transfer RNA (22 tRNAs) and a AT-rich region. It shows that arrangement of the genes is similar with the classical metazoan. The size of mitogenome is 15,236?bp containing A (40.0%), G (9.3%), T (36.6%), and C (14.1%). Moreover, phylogenetic analysis reveals that the branch of S. pterygota is clustered separately. This study enriches the mitogenome database of flesh flies and represents progress for analyzing of phylogenetic relationships.

| S-EPMC7706456 | biostudies-literature

The complete mitochondrial genome of Sarcophaga polystylata (Diptera: Sarcophagidae).

Project description:Sarcophaga polystylata (Ho, 1934) remains to be of medical and epidemiological significance. Here, we report the complete mitochondrial genome (mitogenome) of S. polystylata (GenBank accession no. MW592361). The length of this mitogenome was 15,233 bp with 39.4% A, 9.5% G, 14.3% C, and 36.8% T. The mitogenome of S. polystylata was composed of 13 protein-coding genes (PCGs), two ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs), and a non-coding control region. Phylogenetic tree indicated that S. polystylata and Sarcophaga peregrina clustered together closely, both of which separated clearly from other species. This study provides the mitochondrial genetic data of S. polystylata for further understanding the phylogenetic relationship of sarcophagids species.

| S-EPMC8774057 | biostudies-literature

The complete mitochondrial genome of Sarcophaga tsinanensis (Diptera: Sarcophagidae).

Project description:Sarcophaga tsinanensis (Fan, 1964) (Diptera: Sarcophagidae), a species from subgenus Heteronychia. In this study, we report the complete mitochondrial genome (mitogenome) of S. tsinanensis. The length of this mitogenome was 14,972 bp in total, containing 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, and a non-coding control region. The arrangement of genes was the same as that of ancestral metazoan. Sarcophaga tsinanensis has a high nucleotide bias in A/T accounting for 76.80% of total nucleotides (A 39.9%, G 9.2%, C 13.9%, and T 36.9%). The result of phylogenetic analysis revealed that S. tsinanensis cluster together with species from the same subgenus Heteronychia, showing a clear monophyletic relationship. Sarcophaga tsinanensis is closely related to its sister species Sarcophaga depressifrons, Sarcophaga plotnikovi, and Sarcophaga shnitnikovi. This study provides the mitochondrial data of S. tsinanensis for further research on evolutionary relationships and species identification of flesh flies.

| S-EPMC8425733 | biostudies-literature

The complete mitochondrial genome of Sarcophaga gracilior (Diptera: Sarcophagidae).

Project description:Sarcophaga gracilior Chen, 1975 (Diptera: Sarcophagidae) plays a significant role in epidemiology and medicine. In this study, we first report the complete mitochondrial genome (mitogenome) of S. gracilior. This mitogenome was 15,534 bp in length (GenBank No. MW531675), comprising 13 protein-coding genes (PCGs), two ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs), and a non-coding control region. The arrangement of genes was identical to that of ancestral metazoan. Nucleotide composition revealed a strong A + T bias, accounting for 76.7% (A 39.6%, G 9.3%, C 14.0%, T 37.1%). The phylogenetic relationships indicated that the species of S. gracilior emerged as sister to Sarcophaga melanura. This study provides important mitochondrial data for further studying evolutionary relationships and species identification of flesh flies.

| S-EPMC8158242 | biostudies-literature

The whole mitochondrial genome of Sarcophaga kanoi (Diptera: Sarcophagidae).

Project description:Sarcophaga kanoi Park, 1962, a widely distributed flesh fly in Southeast Asia, is important in forensic entomology. Notably, its mitochondrial genome could provide the unique and accurate molecular information in species identification which facilitate forensic practices in estimation of postmortem interval especially in putrefied cadaver cases. Thus, we sequenced and characterized the whole mitochondrial genome (mitogenome) of S. kanoi for the first time, which was collected from Southern China in this study. The 15,319 bp mitogenome contained 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNA), 2 ribosomal RNA genes (rRNA), and a putative control region. The total nucleotide composition of this circular genome was 39.7% for A, 9.3% for G, 14.2% for C, and 36.8% for T. To better understand the genetic relationship, the phylogenetic analysis was constructed according to the 13 PCGs sequence of S. kanoi and other 11 species. The phylogenetic tree showed that the S. kanoi was placed in a sub-clade with S. similis. Our study updated the new genetic information for dipteran mitogenomes, which could broaden the background knowledge for forensic entomology, molecular genetics and developmental biology. It has the potential application on the species identification using genetic markers.

| S-EPMC7782063 | biostudies-literature

The complete mitochondrial genome of Sarcophila rasnitzyni (Diptera: Sarcophagidae).

Project description:Sarcophila rasnitzyni Rohdendorf and Verves, 1985 (Diptera: Sarcophagidae) is of potential significance in medicine and epidemiology. In this study, we present the mitochondrial genome of S. rasnitzyni. The full length of the mitochondrial genome is 15,321 bp (GenBank accession no. MW592359), and 13 protein-coding genes (PCGs), two ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs), and a non-coding control region were identified. Nucleotide composition is A 38.0%, G 9.9%, C 14.9%, T 37.2%, respectively. It reveals a strong A + T bias (75.2%). Phylogenetic analysis indicates that the species-level relationship between S. rasnitzyni and S. mongolica closely clusters together, and separates clearly from the rest of species. This study provides important genetic data for further enriching our understanding of phylogenetic relationship of sarcophagids species.

| S-EPMC8439204 | biostudies-literature

The complete mitochondrial genome of Sarcophila mongolica (Diptera: Sarcophagidae).

Project description:Sarcophila mongolica Chao & Zhang, 1988 (Diptera: Sarcophagidae) is considered to be of ecological and medical significance. In this study, we report the mitochondrial genome (mitogenome) of S. mongolica. This mitogenome was composed of 15,936 bp in length (GenBank accession no. MT845211), comprising 13 protein-coding genes (PCGs), two ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs), and a non-coding control region. The arrangement of genes was identical to that of ancestral metazoan. Nucleotide composition revealed a strong A + T bias, accounting for 75.40% (A 38.2%, G 9.7%, C 14.9%, and T 37.2%). Phylogenetic analysis indicated that S. mongolica was obviously separated from the other flesh flies. This mitogenome provides important genetic data for further understanding of the evolutionary relationship within Sarcophagid flies.

| S-EPMC7954437 | biostudies-literature

A new species of Sarcophaga (Pandelleisca) (Diptera, Sarcophagidae) from Turkey.

Project description:A new species, Sarcophaga (Pandelleisca) mersinensissp. nov. is described from the Mediterranean region of Turkey. The male terminalia are documented with line drawings, photographs and scanning electron microscope images. The species is compared with the two most similar species, Sarcophaga (Pandelleisca) baudeti (Lehrer) and Sarcophaga (Pandelleisca) theodori (Lehrer), both known from Israel. A key is provided to the western Palaearctic species of Pandelleisca Rohdendorf.

| S-EPMC7280315 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data