Dataset Information

Forecasting COVID-19 confirmed cases, deaths and recoveries: Revisiting established time series modeling through novel applications for the USA and Italy.

ABSTRACT: The novel coronavirus (COVID-19) is an emergent disease that initially had no historical data to guide scientists on predicting/ forecasting its global or national impact over time. The ability to predict the progress of this pandemic has been crucial for decision making aimed at fighting this pandemic and controlling its spread. In this work we considered four different statistical/time series models that are readily available from the 'forecast' package in R. We performed novel applications with these models, forecasting the number of infected cases (confirmed cases and similarly the number of deaths and recovery) along with the corresponding 90% prediction interval to estimate uncertainty around pointwise forecasts. Since the future may not repeat the past for this pandemic, no prediction model is certain. However, any prediction tool with acceptable prediction performance (or prediction error) could still be very useful for public-health planning to handle spread of the pandemic, and could policy decision-making and facilitate transition to normality. These four models were applied to publicly available data of the COVID-19 pandemic for both the USA and Italy. We observed that all models reasonably predicted the future numbers of confirmed cases, deaths, and recoveries of COVID-19. However, for the majority of the analyses, the time series model with autoregressive integrated moving average (ARIMA) and cubic smoothing spline models both had smaller prediction errors and narrower prediction intervals, compared to the Holt and Trigonometric Exponential smoothing state space model with Box-Cox transformation (TBATS) models. Therefore, the former two models were preferable to the latter models. Given similarities in performance of the models in the USA and Italy, the corresponding prediction tools can be applied to other countries grappling with the COVID-19 pandemic, and to any pandemics that can occur in future.

SUBMITTER: Gecili E

PROVIDER: S-EPMC7790225 | biostudies-literature | 2021

REPOSITORIES: biostudies-literature

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Forecasting COVID-19 confirmed cases, deaths and recoveries: Revisiting established time series modeling through novel applications for the USA and Italy.

Gecili Emrah E Ziady Assem A Szczesniak Rhonda D RD

PloS one 20210107 1

The novel coronavirus (COVID-19) is an emergent disease that initially had no historical data to guide scientists on predicting/ forecasting its global or national impact over time. The ability to predict the progress of this pandemic has been crucial for decision making aimed at fighting this pandemic and controlling its spread. In this work we considered four different statistical/time series models that are readily available from the 'forecast' package in R. We performed novel applications wi ...[more]

PMID: 33411744

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Project description:IntroductionRabies, a deadly zoonotic viral disease, accounts for over 50,000 fatalities globally each year. This disease predominantly plagues developing nations, with Thailand being no exception. In the current global landscape, concerted efforts are being mobilized to curb human mortalities attributed to animal-transmitted rabies. For strategic allocation and optimization of resources, sophisticated and accurate forecasting of rabies incidents is imperative. This research aims to determine temporal patterns, and seasonal fluctuations, and project the incidence of canine rabies throughout Thailand, using various time series techniques.MethodsMonthly total laboratory-confirmed rabies cases data from January 2013 to December 2022 (full dataset) were split into the training dataset (January 2013 to December 2021) and the test dataset (January to December 2022). Time series models including Seasonal Autoregressive Integrated Moving Average (SARIMA), Neural Network Autoregression (NNAR), Error Trend Seasonality (ETS), the Trigonometric Exponential Smoothing State-Space Model with Box-Cox transformation, ARMA errors, Trend and Seasonal components (TBATS), and Seasonal and Trend Decomposition using Loess (STL) were used to analyze the training dataset and the full dataset. The forecast values obtained from the time series models applied to the training dataset were compared with the actual values from the test dataset to determine their predictive performance. Furthermore, the forecast projections from January 2023 to December 2025 were generated from models applied to the full dataset.ResultsThe findings revealed a total of 4,678 confirmed canine rabies cases during the study duration, with apparent seasonality in the data. Among the models tested with the test dataset, TBATS exhibited superior predictive accuracy, closely trailed by the SARIMA model. Based on the full dataset, TBATS projections suggest an annual average of approximately 285 canine rabies cases for the years 2023 to 2025, translating to a monthly average of 23 cases (range: 18-30). In contrast, SARIMA projections averaged 277 cases annually (range: 208-214).DiscussionThis research offers a new perspective on disease forecasting through advanced time series methodologies. The results should be taken into consideration when planning and conducting rabies surveillance, prevention, and control activities.

Project description:AbstractThe coronavirus (COVID-19) disease outbreak was a public health emergency of international concern which eventually evolved into a pandemic. Nigeria was locked down in March, 2020 as the country battled to contain the spread of the disease. By August 2020, phase-by-phase easing of the lockdown was commenced and university students will soon return for academic activities. This study undertakes some epidemiological analysis of the Nigerian COVID-19 data to help the government and university administrators make informed decisions on the safety of personnel and students.The COVID-19 data on confirmed cases, deaths, and recovered were obtained from the website of the Nigerian Centre for Disease Control (NCDC) from April 2, 2020 to August 24, 2020. The infection rate, prevalence, ratio, cause-specific death rate, and case recovery rate were used to evaluate the epidemiological characteristics of the pandemic in Nigeria. Exponential smoothing was adopted in modeling the time series data and forecasting the pandemic in Nigeria up to January 31, 2021.The results indicated that the pandemic had infection rate of at most 3 infections per 1 million per day from April to August 2020. The death rate was 5 persons per 1 million during the period of study while recovery rate was 747 persons per 1000 infections. Analysis of forecast data showed steady but gradual decrease in the daily infection rate and death rate and substantial increase in the recovery rate, 975 recoveries per 1000 infections.In general, the epidemiological attributes of the pandemic from the original data and the forecast data indicated optimism in the decrease in the rate of infection and death in the future. Moreover, the infection rate, prevalence and death rate in January 2021 coincided with the predictions based on the analysis. Therefore, the Nigerian government is encouraged to allow universities in the country to reopen while university administrators set up the necessary protocols for strict adherence to safety measures.

Dataset Information

Forecasting COVID-19 confirmed cases, deaths and recoveries: Revisiting established time series modeling through novel applications for the USA and Italy.

Publications

Forecasting COVID-19 confirmed cases, deaths and recoveries: Revisiting established time series modeling through novel applications for the USA and Italy.

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