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The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae).


ABSTRACT: Chloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete chloroplast genome of the Fagopyrum dibotrys has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 159,325?bp in size, and comprises a pair of inverted repeat (IR) regions of 67,788?bp each, a large single-copy (LSC) region of 84,593?bp, and a small single-copy (SSC) region of 6,944?bp. The total Guanine and Cytosine (GC) content is 38.0%, while the corresponding values of the LSC, SSC, and IR region are 36.3%, 34.5%, and 40.2%, respectively. The chloroplast genome contains 131 genes, including 94 protein-coding genes, eight ribosomal RNA genes, and 29 transfer RNA genes. The Maximum-Likelihood Phylogenetic analysis showed a strong sister relationship with F. tataricum in Polygonaceae. Our findings provide a foundation for further investigation of cp genome evolution in F. dibotrys and other higher plants.

SUBMITTER: Zhang Y 

PROVIDER: S-EPMC7799473 | biostudies-literature | 2018 Sep

REPOSITORIES: biostudies-literature

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The complete chloroplast genome sequence of the medicinal plant <i>Fagopyrum dibotrys</i> (Polygonaceae).

Zhang Yan Y   Chen Chen C  

Mitochondrial DNA. Part B, Resources 20180910 2


Chloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete chloroplast genome of the <i>Fagopyrum dibotrys</i> has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 159,325 bp in size, and comprises a pair of inverted repeat (IR) regions of 67,788 bp each, a large single-copy (LSC) region of 84,593 bp, and a small single-copy (SSC) region of 6,944 bp. The total Guanine and Cytosine (GC)  ...[more]

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