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The complete mitochondrial genome of the Montipora peltiformi (Scleractinia: Acroporidae).

ABSTRACT: In this study, the complete mitogenome sequence of stony coral, Montipora peltiformi (Scleractinia), has been decoded for the first time by next generation sequencing and genome assembly. The assembled mitogenome, consisting of 17,884 bp, has unique 13 protein coding genes (PCGs), three transfer RNAs, and two ribosomal RNAs genes. The complete mitogenome of Montipora peltiformi showing 99% identities to Montipora cactus. The complete mitogenome provides essential and important DNA molecular data for further phylogenetic and evolutionary analysis for coral phylogeny.

SUBMITTER: Wang X

PROVIDER: S-EPMC7799476 | biostudies-literature |

REPOSITORIES: biostudies-literature

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The complete mitochondrial genome of Montipora aequituberculata (Scleractinia, Acroporidae).

Project description:The complete mitogenome of the hexacorallia, Montipora aequituberculata has been amplified and sequenced. The mitogenome consists of 17,886?bp, with 13 protein-coding genes, 2 ribosomal RNA genes, 2 transfer RNA genes and a control region. It has been observed that ND5 gene is split into two parts by a large fragment of genes, which commonly presented in scleractinian coral. The overall base composition of the H-strand was A, 24.91%; G, 24.1%; C, 14.2%; and T, 36.8%, with a slight AT bias of 61.7%. The control region was 627?bp in length and located between 12S rRNA and COIII gene. Based on the neighbour-joining (NJ) tree, M. aequituberculata was grouped with M. cactus, Anacropora matthai and Acropora tenuis, and formed a clade of Acroporidae. In conclusion, the complete mitogenome of M. aequituberculata data may provide more informative for phylogenetic approach for corals phylogeny.

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The complete mitochondrial genome of Montipora efflorescens (Scleractinia: Acroporidae).

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Project description:Here, for the first time, we sequenced the complete mitogenome of Alveopora japonica Eguchi, 1968 (Scleractinia: Acroporidae). Genome size was 17,886?bp with 13 protein-coding, two rRNA, and two tRNA genes. This gene composition was identical to the typical scleractinian pattern. Our results strongly support the recent transfer of this coral species to the family Acroporidae.

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The complete mitogenome of Montipora digitata (Cnidarian: Acroporidae).

Project description:In this study, the complete mitogenome sequence of Montipora digitata (Cnidarian: Acroporidae) has been decoded for the first time using the low-coverage whole-genome sequencing method. The overall base composition of M. digitata mitogenome for A, C, G, and T is 24.9%, 14.2%, 24.2%, and 36.8%, respectively, with a GC content of 38.3%. The assembled mitogenome consists of 17,884?bp with unique 13 unique protein-coding genes (PCGs), two ribosomal RNAs, and only three transfer RNAs genes. M. digitata has one big intron insertion in the ND5 gene. The complete M. digitata mitogenome provides essential and important molecular DNA data for further phylogenetic and evolutionary stony coral analysis.

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Complete mitochondrial genomes of three reef forming Acropora corals (Acroporidae, Scleractinia) from Chagos Archipelago, Indian Ocean

Project description:Abstract We present the first mitochondrial genomes from Chagos Archipelago, Indian Ocean, of three putative species of reef forming Acropora (Acropora aff. tenuis, Acroporaaff.cytherea and Acropora aff. orbicularis). The circular genome consists respectively of 18,334 bp, 18,353 bp and 18,584 bp. All mitochondrial genomes recovered comprise 13 protein-coding genes, two transfer RNA genes and two ribosomal RNA genes, with an overall GC content ranging from 37.9% to 38.0%. These new genomic data contribute to our increased understanding of genus Acropora and its species boundaries, ultimately aiding species monitoring and conservation efforts.

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Complete mitochondrial genome of the Turbinaria bifrons (Scleractinia, Dendrophylliidae).

Project description:In this study, the complete mitogenome sequence of the stony coral, Turbinaria bifrons Brüggemann, 1877, has been decoded for the first time by next-generation sequencing (NGS) and genome assembly. The assembled mitogenome was 18,880 bp in length, contained 13 protein coding genes, 2 transfer RNAs, and 2 ribosomal RNAs. The complete mitogenome of T. bifrons showing 97.09% identities to Tubastraea tagusensis. The complete mitogenome provides essential and important DNA molecular data for further phylogenetic and evolutionary analysis for coral phylogeny.

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Complete mitochondrial genome of Echinophylliaaspera (Scleractinia, Lobophylliidae): Mitogenome characterization and phylogenetic positioning.

Project description:Lack of mitochondrial genome data of Scleractinia is hampering progress across genetic, systematic, phylogenetic, and evolutionary studies concerning this taxon. Therefore, in this study, the complete mitogenome sequence of the stony coral Echinophylliaaspera (Ellis & Solander, 1786), has been decoded for the first time by next generation sequencing and genome assembly. The assembled mitogenome is 17,697 bp in length, containing 13 protein coding genes (PCGs), two transfer RNAs and two ribosomal RNAs. It has the same gene content and gene arrangement as in other Scleractinia. All genes are encoded on the same strand. Most of the PCGs use ATG as the start codon except for ND2, which uses ATT as the start codon. The A+T content of the mitochondrial genome is 65.92% (25.35% A, 40.57% T, 20.65% G, and 13.43% for C). Bayesian and maximum likelihood phylogenetic analysis have been performed using PCGs, and the result shows that E.aspera clustered closely with Sclerophylliamaxima (Sheppard & Salm, 1988), both of which belong to Lobophylliidae, when compared with species belonging to Merulinidae and other scleractinian taxa used as outgroups. The complete mitogenome of E.aspera provides essential and important DNA molecular data for further phylogenetic and evolutionary analyses of corals.

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Using ezRAD to reconstruct the complete mitochondrial genome of Porites fontanesii (Cnidaria: Scleractinia).

Project description:Corals in the genus Porites are among the major framework builders of reef structures worldwide, yet the genus has been challenging to study due to a lack of informative molecular markers. Here, we used ezRAD sequencing to reconstruct the complete mitochondrial genome of Porites fontanesii (GenBank accession number MG754069), a widespread coral species endemic to the Red Sea and Gulf of Aden. The gene arrangement of P. fontanesii did not differ from other Scleractinia and consisted of 18,658?bp, organized in 13 protein-coding genes, 2 rRNA genes, and 2 tRNA genes. This mitochondrial genome contributes essential data to work towards a better understanding of evolutionary relationships within Porites.

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The complete mitochondrial genome of the lobe coral Porites lobata (Anthozoa: Scleractinia) sequenced using ezRAD.

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