Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome sequence and phylogenetic analysis of Luciola lateralis, one of the most famous firefly in Japan (Coleoptera: Lampyridae).

ABSTRACT: We will report the complete mitochondrial genome sequence of Japanese firefly 'Heike Botaru', Luciola lateralis (Coleoptera: Lampyridae). Total length of this mitogenome was 16,719?bp and the composition of each base was A (42.50%), C (9.01%), G (14.16%), T (34.33%), respectively. The obtained sequence fulfils general mitogenome composition of metazoan (13 protein coding sequences (CDSs), 22 tRNA genes, two rRNA subunits, and an AT-rich region). From the phylogenetic tree analysis using 25 kinds of insect mitogenome including firefly family was found that L. lateralis is the closest to the genus Aquatica.

SUBMITTER: Maeda J

PROVIDER: S-EPMC7799510 | biostudies-literature | 2017 Aug

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete mitochondrial genome sequence and phylogenetic analysis of Luciola lateralis, one of the most famous firefly in Japan (Coleoptera: Lampyridae).

Maeda Juri J Kato Dai-Ichiro DI Arima Kazunari K Ito Yuji Y Toyoda Atsushi A Noguchi Hideki H

Mitochondrial DNA. Part B, Resources 20170817 2

We will report the complete mitochondrial genome sequence of Japanese firefly 'Heike Botaru', Luciola lateralis (Coleoptera: Lampyridae). Total length of this mitogenome was 16,719 bp and the composition of each base was A (42.50%), C (9.01%), G (14.16%), T (34.33%), respectively. The obtained sequence fulfils general mitogenome composition of metazoan (13 protein coding sequences (CDSs), 22 tRNA genes, two rRNA subunits, and an AT-rich region). From the phylogenetic tree analysis using 2 ...[more]

PMID: 33473894

Similar Datasets

The complete mitogenome and phylogenetic analysis of Japanese firefly 'Genji Botaru' Luciola cruciata (Coleoptera: Lampyridae).

Project description:We performed mitogenome analysis of Japanese firefly Luciola cruciata (Coleoptera: Lampyridae), which is unique species in Japan. It is classified into six haplotypes based on the difference of COII sequence on mitochondrial DNA. The complete mitogenome sequence of Tohoku group has been registered so far, we newly analysed West Japan groups which belong to different haplotype. The total length of analysed mitogenome was 15,990 bp, being one base longer than the case of Tohoku's firefly. The base substitution was found at 273 positions over the whole mitochondrial sequence, while amino acid substitution accompanying it was observed at only 11 positions.

| S-EPMC7800388 | biostudies-literature

The complete mitochondrial genome of the firefly, Luciola curtithorax (Coleoptera: Lampyridae).

Project description:We report the complete mitochondrial genome of firefly, Luciola curtithorax. The circular genome of 16,882?bp has a base composition of A (44.98%), C (11.84%), G (8.15%), and T (35.03%). Our sequence is similar to other Metazoa, which contains 13 protein-coding genes. All 13 protein-coding genes were initiated by the ATN (ATT, ATA, and ATG) codon. Ten protein-coding genes stopped with TAA or TAG codon and the other three genes have an incomplete termination codon, a single T--. We sequenced the mitochondrial genome of fireflies to analyze phylogenetic relationships and deduce the evolution of their flashing signals.

| S-EPMC7800498 | biostudies-literature

Complete mitochondrial genome of the Korean endemic firefly, Luciola unmunsana (Coleoptera: Lampyridae).

Project description:In this study, we announce the complete mitochondrial genome (mitogenome) of the Korean endemic firefly, Luciola unmunsana Doi, 1931. The full-length circular genome was 15,858 bp, with 77.94% A/T content. It contained the typical set of 37 metazoan genes: 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, and 2 ribosomal RNA (rRNA) genes, as well as an A + T-rich region. The gene arrangement of the species is identical to that of the ancestral arrangement found in the majority of insects. The maximum-likelihood tree, built using all PCGs and two rRNAs via randomized accelerated maximum likelihood (RAxML) showed that L. unmunsana was grouped as a sister to L. curtithorax with the highest nodal support. However, another Luciola species clustered with the Aquatica species such that the genus Luciola was a non-monophyletic group. Therefore, more sampling is required to clarify the phylogeny of Luciola.

| S-EPMC7782064 | biostudies-literature

Molecular Systematics of the Firefly Genus Luciola (Coleoptera: Lampyridae: Luciolinae) with the Description of a New Species from Singapore.

Project description:The firefly genus Luciola sensu McDermott contains 282 species that are distributed across major parts of Asia, Europe, Africa, Australia, and the Pacific islands. Due to phenotypic similarities, species identification using external morphological characters can be unreliable for this group. Consequently, decades of piecemeal taxonomic treatments have resulted in numerous erroneous and contentious classifications. Furthermore, our understanding of the group's evolutionary history is limited due to the lack of a robust phylogenetic framework that has also impeded efforts to stabilize its taxonomy. Here, we constructed molecular phylogenies of Luciola and its allies based on combined mitogenomes and Cytochrome c oxidase subunit 1 (COX1) sequences including a newly sequenced mitogenome of an unidentified taxon from Singapore. Our results showed that this taxon represents a distinct and hitherto undescribed evolutionary lineage that forms a clade with L. filiformis from Japan and L. curtithorax from China. Additionally, the Singaporean lineage can be differentiated from other congeners through several external and internal diagnostic morphological characters, and is thus described herein as a new species. Our phylogeny also strongly supported the paraphyly of Luciola with regard to L. cruciata and L. owadai, which were inferred to be more closely related to the genus Aquatica as opposed to other members of Luciola sensu stricto. The genus Hotaria was inferred as a derived clade within Luciola (sister to L. italica), supporting its status as a subgenus of Luciola instead of a distinct genus. This is the first time since 1909 that a new species of luminous firefly has been discovered in Singapore, highlighting the need for continued biodiversity research, even in small, well-studied and highly developed countries, such as Singapore.

| S-EPMC7998795 | biostudies-literature

The complete mitochondrial genome of the firefly, Pteroptyx maipo (Coleoptera: Lampyridae).

Project description:We report the complete mitochondrial genome of firefly, Pteroptyx maipo. The circular genome of 16,127?bp has a base composition of A (44.22%), C (11.60%), G (8.23%) and T (35.96%). Our sequence is similar to other Metazoa, which contains 13 protein-coding genes. All 13 protein-coding genes were initiated by the ATN (ATT, ATA and ATG) codon. Nine protein-coding genes stopped with TAA or TAG codon and the other four genes have an incomplete termination codon, a single T. We sequenced the mitochondrial genome of fireflies to analyze phylogenetic relationships and deduce the evolution of their flashing signals.

| S-EPMC7799747 | biostudies-literature

The complete mitochondrial genome of the firefly, Abscondita anceyi (Olivier) (Coleoptera: Lampyridae).

Project description:We report the complete mitochondrial genome of firefly, Abscondita anceyi (Olivier). The circular genome of 16,519?bp has a base composition of A (43.81%), C (11.80%), G (8.35%), and T (36.03%). Similar to other Metazoa, our sequence contains 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and a non-coding AT-rich region. We sequenced the mitochondrial genome of fireflies to analyse phylogenetic relationships and deduce the evolution of their flashing signals.

| S-EPMC7800902 | biostudies-literature

The complete mitochondrial genome of an ornamental firefly Pyrocoelia analis (Coleoptera, Lampyridae).

Project description:Pyrocoelia analis (Fabricius, 1801) (Coleoptera, Lampyridae, Pyrocoelia) is a beautiful ornamental insect widely distributed in East and Southeast Asia. The complete mitogenome of P. analis has been sequenced. The mitogenome, total length of 14,785 bp, includes 13 protein-coding genes, 22 transfer RNAs, two ribosomal RNAs, and a noncoding D-loop region. The overall base composition of Pyrocoelia analis mitogenome is 34.63% for A, 13.69% for C, 42.79% for T, and 8.89% for G, with a high A + T bias of 77.42%. These mitogenome data might be useful for further phylogeography analyses and other related studies in Hymenoptera.

| S-EPMC9176343 | biostudies-literature

The complete mitochondrial genome of the firefly, Diaphanes citrinus (Olivier), (coleoptera: Lampyridae).

Project description:We report the complete mitochondrial genome of firefly, Diaphanes citrinus (Olivier). The circular genome of 18,594 bp and has a base composition of A (41.26%), C (11.64%), G (10.18%), T (36.92%). Similar to other Metazoa, our sequence contains 13 protein-coding genes, 21 transfer RNA genes, two ribosomal RNA genes, and a non-coding AT-rich region. We sequenced the mitochondrial genome of fireflies to analyze phylogenetic relationships and deduce the evolution of their flashing signals.

| S-EPMC7706614 | biostudies-literature

The complete mitochondrial genome of the firefly, Asymmetricata circumdata (Motschulsky) (Coleoptera: Lampyridae).

Project description:We report the complete mitochondrial genome of firefly, Asymmetricata circumdata (Motschulsky).The circular genome of 15,967 bp has a base composition of A (42.44%), C (12.83%), G (8.79%) and T (36.16%). Similar to other Metazoa, our sequence contains 13 protein-coding genes. All 13 protein-coding genes were initiated by the ATN (ATT, ATA and ATG) codon. Eight protein-coding genes stopped with TAA or TAG codon and the other 5 genes have an incomplete termination codon, a single T. We sequenced the mitochondrial genome of fireflies to analyze phylogenetic relationships and deduce the evolution of their flashing signals.

| S-EPMC7800248 | biostudies-literature

Firefly (Coleoptera, Lampyridae) species from the Atlantic Forest hotspot, Brazil.

Project description:BackgroundWe compiled a database of firefly species records from the Atlantic Forest hotspot in Brazil and made it available at GBIF. Data were gathered from literature and from several key entomological collections, including: Coleção entomológica Prof. José Alfredo Pinheiro Dutra (DZRJ/UFRJ) and Coleção do Laboratório de Ecologia de Insetos from Universidade Federal do Rio de Janeiro (CLEI/UFRJ); Coleção Entomológica do Instituto Oswaldo Cruz (CEIOC); Museu de Zoologia da Universidade de São Paulo (MZSP); Coleção Entomológica Pe. Jesus Santiago Moure from Universidade Federal do Paraná (DZUP/UFPR); and Coleção Entomológica from Universidade Federal Rural de Pernambuco (UFRPE). This database represents the largest contribution to a public repository of recorded occurrences from Neotropical fireflies.New informationThis dataset shows the occurrence and abundance of firefly species in the Atlantic Forest hotspot. Firefly species endemic to this biome are also present and considered in the study. These data can assist scientific and societal needs, by supporting future research projects and conservation decision-making.

| S-EPMC10848419 | biostudies-literature