Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitogenome of Schizopygopsis stoliczkai (Cypriniformes: Cyprinidae) from Western China.

ABSTRACT: In this study, we firstly sequenced the complete mitochondrial genome of Schizopygopsis stoliczkai (Cypriniformes: Cyprinidae) from the Yarkand River, Xinjiang, China. The mitogenome is 16,833?bp in length, composed of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and 2 non-coding regions (origin of light-strand replication and control region). The gene content and order is in accord with the common vertebrate form. The nucleotide base composition of H-strand is 28.4% A, 27.0% T, 26.1% C, and 18.5% G. The phylogenetic analysis based on the complete mitochondrial sequences showed that S. stoliczkai was clustered into Schizopygopsis clade.

SUBMITTER: Zhang C

PROVIDER: S-EPMC7799533 | biostudies-literature | 2016 Sep

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete mitogenome of Schizopygopsis stoliczkai (Cypriniformes: Cyprinidae) from Western China.

Zhang Chao C Chen Liqiang L Ding Chengzhi C

Mitochondrial DNA. Part B, Resources 20160904 1

In this study, we firstly sequenced the complete mitochondrial genome of Schizopygopsis stoliczkai (Cypriniformes: Cyprinidae) from the Yarkand River, Xinjiang, China. The mitogenome is 16,833 bp in length, composed of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and 2 non-coding regions (origin of light-strand replication and control region). The gene content and order is in accord with the common vertebrate form. The nucleotide base composition of H-strand is 2 ...[more]

PMID: 33473589

Similar Datasets

The complete mitogenome of Paratanakia chii (Cypriniformes; Cyprinidae).

Project description:Paratanakia chii is a bitterling fish of the genus Paratanakia, subfamily Acheilognathinae and family Cyprinidae. The mitochondrial DNA sequence of P. chii is reported in this paper. The complete mitochondrial genome of P. chii is 16,575 bp in length, including 13 protein-coding genes (PCGs), 2 rRNA genes, 22 tRNA genes, and 1 displacement loop (D-loop). The genome sequence is consistent with those of most other carp. The majority of PCGs have AT- (Met) start codons and TA- end codons. The A + T contents of the genome, PCGs, transfer RNAs (tRNAs), and ribosomal RNAs (rRNAs) are 56.92%, 58.07%, 56.34%, and 54.21%, respectively. Phylogenetic analysis showed that P. chii is most closely related to Tanankia himantegus. These data will benefit relative ecological and phylogenetic studies.

| S-EPMC10114962 | biostudies-literature

Characterization of the complete mitogenome of Gymnocypris dobula (Gunther, 1868) (Cypriniformes: Cyprinidae).

Project description:Gymnocypris dobula, classified into the highly specialized Schizothoracine fish, is endemic to Tibet, China. The complete mitochondrial DNA sequence of G. dobula was 16,728 base pairs in length and comprised 22 transfer RNA genes, 13 protein-coding genes, two ribosomal RNA genes as well as one control region as in a typical vertebrate mitochondrial DNA gene. The ML and BI trees showed that G. dobula was most closely related to Gymnocypris scleracanthus within the highly specialized group. This mitogenome provides new molecular data for further taxonomic and phylogenetic studies of Schizothoracine fish.

| S-EPMC8812766 | biostudies-literature

Complete mitochondrial genome of the Korean oily shinner Sarcocheilichthys nigripinnis morii (Cypriniformes, cyprinidae): mitogenome characterization and phylogenetic analysis.

Project description:The Korean oily shinner (Sarcocheilichthys nigripinnis morii) is a subspecies belonging to the subfamily Gobioninae in the family Cyprinidae and is endemic to Korea. Herein, we report the first sequencing and assembly of the complete mitochondrial genome of S. nigripinnis morii. The complete mitochondrial genome is 16,679 bp long, consisting of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and a control region. It has the typical vertebrate mitochondrial gene arrangement. Phylogenetic analysis using mitogenomes of 16 species showed that S. nigripinnis morii was clustered with S. nigripinnis and S. variegatus microoculus and grouped with the other Cyprinidae species.

| S-EPMC7800417 | biostudies-literature

The complete mitochondrial genome of Leuciscus merzbacheri (Cypriniformes: Cyprinidae)

Project description:Abstract Leuciscus merzbacheri (Zugmayer, 1912) is a cyprinid fish endemic to China, with a distribution range limited to Xinjiang Province. As a landmark species in the Junggar Basin, L. merzbacheri is of considerable significance regarding our understanding of the adaptive evolution of salt and alkali tolerance. In this study, the complete mitochondrial sequence of L. merzbacheri was obtained for the first time by high-throughput sequencing. The circular mitogenome is 16,609 bp in length and contains the standard 37 genes, including 13 protein-coding, 22 transfer RNA, and 2 ribosomal RNA genes, which is similar to that of other fish. The mitogenome contents of A, T, C, and G were 27.9, 26.3, 27.1, and 18.7%, respectively. Phylogenetically, L. merzbacheri was located on a new branch near the base of the phylogenetic tree, thereby suggesting an early origin.

| S-EPMC10035939 | biostudies-literature

Complete mitochondrial genome of Schizothorax davidi (Teleostei: Cypriniformes: Cyprinidae).

Project description:This study provides a mitochondrial complete genome of Schizothorax davidi. The complete genome is 16,576 bp in length with an A + T content of 54.9%, which contains 13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes. The phylogenetic analysis indicated that S. davidi is closely related to Schizothorax lissolabiatus. These results contribute to explore the adaptation strategy of S. davidi on the conditions of Qinghai-Tibet Plateau.

| S-EPMC7707262 | biostudies-literature

Complete mitochondrial genome of Schizothorax gongshanensis (Cypriniformes: Cyprinidae).

Project description:In this study, the complete mitochondrial DNA of Schizothorax gongshanensis was determined. The complete genome is 16,591?bp in length which contains 13 protein-coding genes, 22 transfer RNA genes, 2 rRNA genes, an origin of light-strand replication (OL) and a control region (D-Loop). The complete mtDNA sequence of S. gongshanensis provides a useful genetic marker for the studies on molecular systematics, population genetics and stock assessment.

| S-EPMC7800125 | biostudies-literature

The complete mitochondrion genome of the Barbodes hexagonolepis (Cypriniformes, cyprinidae).

Project description:The Barbodes hexagonolepis, as an important commercial species, had the limited resources on biology and genetics. We reported the complete mitogenome of this species, and got a whole length of 16 587 bp (containing two rRNAs, 22 tRNAs, 13 mRNAs and one D-loop region). The two rRNAs located between tRNAphe and tRNAleu and were separated by tRNAval. The 22 tRNAs was ranged from 66 bp (tRNAcys) to 76 bp (tRNAleu and tRNAlys) in length. The 13 mRNAs had four overlap regions, three types of start codons and four types of termination codons. The D-loop region was found between tRNAPro and tRNAPhe. To further explore the phylogenetic relationship of the B. hexagonolepis, we constructed the phylogenetic tree and verified that the B. hexagonolepi was a part of the Barbinae and independent from other genus of the Barbinae. This result provided the valuable evidence on phylogenetic relationship of the B. hexagonolepi at the molecular level and essential resource for further research on this species.

| S-EPMC7799650 | biostudies-literature

Complete mitogenome of Nemacheilus subfusca (Cypriniformes: Cobitidae).

Project description:The Nemacheilus subfusca (N. subfusca) is a species of the Noemacheilinae in the Cobitidae family, which has been few reported. The first complete mitochondrion of the N. subfusca is 16 585 bp in length, containing 13 protein-coding genes, two rRNA genes (12S and 16S rRNA), 22 tRNA genes and a control region (D-loop region). The longest protein-coding gene of this mitochondrion was ND5 (1839 bp), and the 22 tRNA genes were range from 66 (tRNACys ) to 76 (tRNALys ) in length. The 12S rRNA (957 bp) and 16S rRNA (1677 bp) were separated by TrnaVal , and the D-loop region located between tRNAPro and tRNAPhe genes. The phylogenetic indicates that the N. subfusca was independent from other species of distinct genus in the Noemacheilinae, which provided the valuable evidence on phylogenetic relationship of the N. subfusca at the molecular level.

| S-EPMC7799717 | biostudies-literature

The complete mitochondrial genome sequence of Schizothorax dulongensis (Cypriniformes, Cyprinidae) from Irrawaddy River in China.

Project description:Schizothorax dulongensis Huang (1985) is an endemic species in China, which is mainly distributed in the Irrawaddy River and its tributaries. In this study, the complete mitochondrial genome was sequenced. Its length is 16,579 bp, containing 22 tRNAs, two rRNAs, and 13 PCGs. The phylogenetic results showed that S. dulongensis and these species from Brahmaputra River clustered a clade, and supported the Brahmaputra River and the Irrawaddy River have been reorganized of drainage.

| S-EPMC8381953 | biostudies-literature

The complete mitochondrial genome of Neolissochilus benasi (Cypriniformes: Cyprinidae).

Project description:In this study, the complete mitochondrial genome of Neolissochilus benasi has been determined by polymerase chain reaction method for the first time. The overall base composition of N. benasi mitogenome is 31.8% for A, 27.4% for C, 15.9% for G and 25.0% for T. The percentage of G + C content is 41.3%. The mitogenome is a circular DNA molecule of 16 583 bp in length with a D-loop region and contains 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes and 13 protein-coding genes. The mitochondrial genome sequencing for N. benasi in this study provides important molecular data for further evolutionary analysis for Cyprinoidea.

| S-EPMC7748629 | biostudies-literature