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The complete chloroplast genome of hemiparasitic flowering plant Schoepfia jasminodora.

ABSTRACT: The complete chloroplast genome hemiparasitic plant Schoepfia jasminodora (Schoepfiaceae), was determined in this study by de novo assembly with whole-genome sequence data. The chloroplast genome is 118,743?bp in length with a typical quadripartite structure containing a pair of inverted repeats of 12,406?bp, separated by a large and a small single copy fragments of 84,168?bp and 9763?bp, respectively. The chloroplast genome contains 112 genes that consisting of 69 protein-coding, 27 tRNA, 4 rRNA and 3 pseudolized genes. All of the ndh (except for ndhA) and two tRNA (trnV-UAG and trnG-UCC) genes were found to be lost. The three pseudogenes are ndhA, ycf15 and trnL-CAA. Schoepfia represents the early stages of chloroplast genome degradation along with its transition to heterotrophy in related taxa.

SUBMITTER: Su HJ

PROVIDER: S-EPMC7799538 | biostudies-literature | 2016 Oct

REPOSITORIES: biostudies-literature

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The complete chloroplast genome of hemiparasitic flowering plant Schoepfia jasminodora.

Su Huei-Jiun HJ Hu Jer-Ming JM

Mitochondrial DNA. Part B, Resources 20161018 1

The complete chloroplast genome hemiparasitic plant Schoepfia jasminodora (Schoepfiaceae), was determined in this study by de novo assembly with whole-genome sequence data. The chloroplast genome is 118,743 bp in length with a typical quadripartite structure containing a pair of inverted repeats of 12,406 bp, separated by a large and a small single copy fragments of 84,168 bp and 9763 bp, respectively. The chloroplast genome contains 112 genes that consisting of 69 protein-coding, ...[more]

PMID: 33473621

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