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The complete mitochondrial genome of the copepod Calanus glacialis.


ABSTRACT: Calanus glacialis, a marine planktonic copepod, is a keystone species in the Arctic Ocean. In this study, we shotgun sequenced the total DNA of one C. glacialis individual, using the NextSeq® Illumina platform, in order to determine its mitochondrial genome sequence. We successfully assembled and annotated this 20,674?bp long sequence, which included 13 protein-coding genes, 2 rRNA genes and 22 tRNA genes. Common gene-coding regions of 19 other species were used to reconstruct a phylogenetic tree, using mitogenomes of the phylogenetically closest copepods available. The new resource described here constitutes a tool of interest for better understanding the structure and dynamics of C. glacialis populations.

SUBMITTER: Choquet M 

PROVIDER: S-EPMC7799568 | biostudies-literature | 2017 Aug

REPOSITORIES: biostudies-literature

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The complete mitochondrial genome of the copepod <i>Calanus glacialis</i>.

Choquet Marvin M   Alves Monteiro Homère J HJ   Bengtsson-Palme Johan J   Hoarau Galice G  

Mitochondrial DNA. Part B, Resources 20170806 2


<i>Calanus glacialis</i>, a marine planktonic copepod, is a keystone species in the Arctic Ocean. In this study, we shotgun sequenced the total DNA of one <i>C. glacialis</i> individual, using the NextSeq<sup>®</sup> Illumina platform, in order to determine its mitochondrial genome sequence. We successfully assembled and annotated this 20,674 bp long sequence, which included 13 protein-coding genes, 2 rRNA genes and 22 tRNA genes. Common gene-coding regions of 19 other species were used to recon  ...[more]

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