Complete plastomes of three endemic Mexican pine species (Pinus subsection Australes).
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ABSTRACT:
SUBMITTER: Aguirre-Dugua X
PROVIDER: S-EPMC7799579 | biostudies-literature | 2017 Aug
REPOSITORIES: biostudies-literature
Publications
Complete plastomes of three endemic Mexican pine species (<i>Pinus</i> subsection <i>Australes</i>).
Aguirre-Dugua Xitlali X Gernandt David S DS
Mitochondrial DNA. Part B, Resources 20170822 2
We assembled the plastomes of <i>Pinus greggii</i>, <i>P. jaliscana</i> and <i>P. oocarpa</i> from 100 bp paired-end Illumina reads. We combined <i>de novo</i> (comparing <i>Velvet</i> and <i>SPAdes</i>) with reference-guided assembly and a final step of gap filling. <i>SPAdes</i> performed better than <i>Velvet</i> based on scaffold number (180 vs. 263) and mean length (1886 vs. 560 bp), and number of gaps (2 vs. 4). Annotations were automatically transferred from <i>P. taeda</i> NC_021440 and ...[more]
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