Browse
Submit Data
Databases
API
Help

Dataset Information

39 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete chloroplast genome sequence of the threatened trident maple Acer buergerianum (Aceraceae).

ABSTRACT: Trident maple Acer buergerianum Miq., belonging to the family of Aceraceae, is an important ornamental tree. Here, we report the complete chloroplast genome sequence of A. buergerianum. The circular genome was 156,477 bp in size, and comprised a pair of inverted repeat (IR) regions of 26,090 bp, a large single-copy (LSC) region of 86,246 bp and a small single-copy (SSC) region of 18,062 bp. It contained 134 genes, including 89 protein-coding genes, 40 transfer RNA genes, and 8 ribosomal genes. Maximum likelihood phylogenomic analysis shows that A. buergerianum is closely related to other Acer species, including A. miaotaiense, A. morrisonense, and A. davidii.

SUBMITTER: Xu JH

PROVIDER: S-EPMC7799601 | biostudies-literature | 2017 May

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete chloroplast genome sequence of the threatened trident maple Acer buergerianum (Aceraceae).

Xu Jia-Huan JH Wu Hai-Bo HB Gao Li-Zhi LZ

Mitochondrial DNA. Part B, Resources 20170512 1

Trident maple Acer buergerianum Miq., belonging to the family of Aceraceae, is an important ornamental tree. Here, we report the complete chloroplast genome sequence of A. buergerianum. The circular genome was 156,477 bp in size, and comprised a pair of inverted repeat (IR) regions of 26,090 bp, a large single-copy (LSC) region of 86,246 bp and a small single-copy (SSC) region of 18,062 bp. It contained 134 genes, including 89 protein-coding genes, 40 transfer RNA genes, and 8 ribo ...[more]

PMID: 33473797

Similar Datasets

The complete chloroplast genome of Acer negundo (Aceraceae).

Project description:Acer negundo L. is popular as ornamental shade trees. In this study, we sequenced, assembled and characterized the complete chloroplast genome of A. negundo. The genome sequence of A. negundo was 155,910 bp, consisting of a large single-copy region with 85,650 bp (LSC), a small single-copy region with 18,092 bp (SSC), and two inverted repeat regions with 26,084 and 26,090 bp (IRs). The GC content in the chloroplast genome of A. negundo was 37.9%. A total of 127 functional genes were predicted, including 83 protein-coding genes, 40 tRNA genes, and 4 rRNA genes. As shown in the phylogenetic tree, A. negundo was clustered into a monophyletic cluster.

| S-EPMC8667938 | biostudies-literature

Complete mitochondrial genome sequence of Acer miaotaiense (Aceraceae).

Project description:Acer miaotaiense P. C. Tsoong is a rare and endangered tree endemic to the Qinling Mountains of China and is listed as a national third-class protected plant. In this study, we sequenced the complete mitochondrial genome of Acer miaotaiense using the Illumina Novaseq 6000 and Nanopore platforms. The total mitochondrial genome length is 819,227 bp and has 69 genes, including 41 protein-coding, 25 tRNA, and 3 rRNA genes. The genome nucleotide composition was asymmetric, with an overall G + C content of 45.7%. Phylogenetic analysis indicated that Acer miaotaiense is closely related to the congeneric Acer yangbiense.

| S-EPMC9341336 | biostudies-literature

The complete chloroplast genome sequence of Acer cinnamomifolium (Aceraceae), a plant species endemic to China.

Project description:Acer cinnamomifolium (Aceraceae) is a plant species endemic to China. In our present study, the complete chloroplast (cp) genome sequence of Acer cinnamomifolium was assembled from Illumina pair-end sequencing data. The complete cp genome sequence of A. cinnamomifolium was 156,227 bp in size. Totally, 139 genes were identified, including 88 protein-coding genes, 40 transfer RNAs, 8 ribosomal RNA genes, and 3 pseudogenes (infA, ycf1, and rps2). Phylogenetic analysis results showed that A. cinnamomifolium is sister to Acer sino-oblongum, with a support rate of 100%.

| S-EPMC7707229 | biostudies-literature

Complete chloroplast genome and evolutionary analysis of Acer paihengii (Sapindales:Aceraceae).

Project description:In this study, the complete chloroplast genome of Acer paihengii, a tree species native to China, was sequenced and assembled through second-generation sequencing. The complete chloroplast genome of A. paihengii is 155,967 bp in length with a typical quadripartite structure, encompassing 130 genes including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis of 22 related species indicated that A. paihengii was more closely related to Acer coriaceifolium and Acer sino-oblongum.

| S-EPMC9467554 | biostudies-literature

The complete chloroplast genome of an endangered and endemic species, Acer yangbiense (Aceraceae).

Project description:Acer yangbiense Y.S. Chen & Q.E. Yang is a species of Aceraceae with a very restricted distribution in Yunnan, China. In this study, the complete chloroplast (cp) genome sequence of A. yangbiense was reported and characterized. The cp genome is 155,706 bp in length and contains a pair of inverted repeats (IRs, 25,858 bp) separated by a large (85,859 bp) and small (18,131 bp) single-copy regions. A total of 128 genes were predicted, including 83 protein-coding genes, 37 tRNA genes and 8 rRNA genes. The phylogenetic analysis suggested that A. yangbiense is sister of the clade formed by A. laevigatum, A. palmatum, A. wilsonii, and A. buergerianum.

| S-EPMC7748798 | biostudies-literature

Characterization of the complete chloroplast genome of sugar maple (Acer saccharum).

Project description:Acer saccharum is one ecologically and economically important tree species cultivated widely across the world. In this study we generated the complete chloroplast (cp) genome of A. saccharum via genome-skimming method. The assembled genome is 155,684 base-pairs (bp) in size, with one large single copy region of 85,393 bp and one small single copy region of 18,033 bp separated by two inverted repeats of 26,129 bp. The genome contains a total of 133 genes, including 85 protein-coding genes, 8 rRNAs and 40 tRNAs. Furthermore, phylogenomic estimation strongly supported A. saccharum as a distinct lineage within the monophyletic Acer.

| S-EPMC7720981 | biostudies-literature

Complete chloroplast genome sequence of Acer nikoense (Sapindaceae).

Project description:Acer nikoense (Sapindaceae: Acer) is a deciduous tree, belonging to the Ser. Grisea of Sect. Trifoliata. Its complete genome sequence was obtained using genome Illumina pair-end sequencing data. It had a typical quadripartite structure with 155,952 bp in length, consisting of a large single-copy region (85,720 bp) and a small single-copy region (18,072 bp), as well as a pair of inverted repeats (26,080 bp). The total GC content was 37.9%. A total of 113 unique genes were annotated, including 30 tRNAs, 4 rRNAs, and 79 protein-coding genes. The phylogenetic analysis indicated that A. nikoense and A. triflorum were the most closely related.

| S-EPMC7782346 | biostudies-literature

The complete chloroplast genome of Acer pentaphyllum (Sapindaceae), a critically endangered maple endemic to China.

Project description:Acer pentaphyllum is a critically endangered maple confined to the valley of Yalong River in Southwest China. The whole chloroplast genome of A. pentaphyllum was 156,862 bp in length with a typical quadripartite structure, containing a large single-copy (LSC) region of 85,292 bp, a small single-copy (SSC) region of 18,146 bp, and a pair of inverted repeat (IR) regions of 26,712 bp separated among them. Totally 137 unique genes were predicted, comprising 89 protein-coding genes, 39 tRNA genes, and 8 rRNA genes (4 rRNA types). The phylogenetic analysis showed that A. pentaphyllum was resolved as sister to the clade containing A. griseum and A. sino-oblongum. This study reported the first complete chloroplast genome sequences of A. pentaphyllum and reconstructed a phylogeny tree based on 16 Sapindaceae species, which may provide new insight into phylogenetic studies of Sapindaceae and further conservation strategies for A. pentaphyllum.

| S-EPMC7748690 | biostudies-literature

Characterization of the Complete Chloroplast Genome of Acer truncatum Bunge (Sapindales: Aceraceae): A New Woody Oil Tree Species Producing Nervonic Acid.

Project description:Acer truncatum, which is a new woody oil tree species, is an important ornamental and medicinal plant in China. To assess the genetic diversity and relationships of A. truncatum, we analyzed its complete chloroplast (cp) genome sequence. The A. truncatum cp genome comprises 156,492?bp, with the large single-copy, small single-copy, and inverted repeat (IR) regions consisting of 86,010, 18,050, and 26,216?bp, respectively. The A. truncatum cp genome contains 112 unique functional genes (i.e., 4 rRNA, 30 tRNA, and 78 protein-coding genes) as well as 78 simple sequence repeats, 9 forward repeats, 1 reverse repeat, 5 palindromic repeats, and 7 tandem repeats. We analyzed the expansion/contraction of the IR regions in the cp genomes of six Acer species. A comparison of these cp genomes indicated the noncoding regions were more diverse than the coding regions. A phylogenetic analysis revealed that A. truncatum is closely related to A. miaotaiense. Moreover, a novel ycf4-cemA indel marker was developed for distinguishing several Acer species (i.e., A. buergerianum, A. truncatum, A. henryi, A. negundo, A. ginnala, and A. tonkinense). The results of the current study provide valuable information for future evolutionary studies and the molecular barcoding of Acer species.

| S-EPMC6925723 | biostudies-literature

Complete chloroplast genome sequence of Acer ginnala, an important ornamental tree.

Project description:Acer ginnala is a woody Acer plant with high ornamental value. In the present study, the chloroplast genome of A. ginnala was determined, annotated, and analyzed phylogenetically. The total chloroplast genome was 156,184 bp in length, consisting of a large single-copy region (86,525 bp), a small single-copy region (18,947 bp), and two inverted repeat regions (25,356 bp). The complete chloroplast genome contains 133 genes, including 90 protein-coding genes, 36 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. The phylogenetic analysis based on the sequences of 49 common proteins from 25 species demonstrated a close relationship between A. ginnala and three others Acer plants species including A. truncatum, A. miaotaiense, and A.catalpifolium. This study will help to understand the phylogenetic position of A. ginnala in genus Acer.

| S-EPMC7748649 | biostudies-literature