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Chloroplast genome sequence of the wild tetraploid potato relative Solanum stoloniferum.

ABSTRACT: Solanum stoloniferum is a wild tuber-bearing species belonging to Solanaceae family. The complete chloroplast genome of S. stoloniferum was constituted by de novo assembly using a small amount of whole genome sequencing data. The chloroplast genome of S. stoloniferum was the circular DNA molecule with a length of 155,567?bp and consisted of 86,007?bp of large single copy, 18,374?bp of small single copy, and 25,593?bp of a pair of inverted repeat regions. A total of 158 genes were annotated including 105 protein-coding genes, 45 tRNA genes, and eight rRNA genes. Maximum likelihood phylogenetic analysis with 25 Solanaceae species revealed that S. stoloniferum is the most closely grouped with S. tuberosum.

SUBMITTER: Park TH

PROVIDER: S-EPMC7799944 | biostudies-literature | 2018 Apr

REPOSITORIES: biostudies-literature

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Chloroplast genome sequence of the wild tetraploid potato relative Solanum stoloniferum.

Park Tae-Ho TH

Mitochondrial DNA. Part B, Resources 20180401 1

Solanum stoloniferum is a wild tuber-bearing species belonging to Solanaceae family. The complete chloroplast genome of S. stoloniferum was constituted by de novo assembly using a small amount of whole genome sequencing data. The chloroplast genome of S. stoloniferum was the circular DNA molecule with a length of 155,567 bp and consisted of 86,007 bp of large single copy, 18,374 bp of small single copy, and 25,593 bp of a pair of inverted repeat regions. A total of 15 ...[more]

PMID: 33474189

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Project description:Crop wild relatives are gaining increasing attention. Their use in plant breeding is essential to broaden the genetic basis of crops as well as to meet industrial demands, for global food security and sustainable production. Solanum malmeanum (Solanum sect. Petota, Solanaceae) is a wild relative of potatoes (S. tuberosum) from Southern South America, occurring in Argentina, Brazil, Paraguay and Uruguay. This wild potato has been largely mistaken for or historically considered as conspecific with S. commersonii. Recently, it was reinstated at the species level. Retrieving information on its traits and applied uses is challenging, because the species name has not always been applied correctly and also because species circumscriptions and morphological criteria applied to recognize it have not been consistent. To overcome these difficulties, we performed a thorough literature reference survey, herbaria specimens' identification revision and genebank database queries to review and update the information available on this potato wild relative, contributing to an increase in research on it to fully understand and explore its potential for potato breeding. Scarce studies have been carried out concerning its reproductive biology, resistance against pests and diseases as well as tolerance to abiotic stresses and evaluation of quality traits. The scattered information available makes it less represented in genebanks and genetic studies are missing. We compile, update and present available information for S. malmeanum on taxonomy, geographical distribution, ecology, reproductive biology, relationship with its closest relatives, biotic and abiotic stresses resistance and quality traits and discuss ways to overcome sexual barriers of hybridization and future perspectives for its use in potato breeding. As a final remark, we highlight that this species' potential uses have been neglected and must be unlocked. Thus, further studies on morphological and genetic variability with molecular tools are fundamental for an efficient conservation and applied use of this promising genetic resource.

Dataset Information

Chloroplast genome sequence of the wild tetraploid potato relative Solanum stoloniferum.

Publications

Chloroplast genome sequence of the wild tetraploid potato relative <i>Solanum stoloniferum</i>.

Similar Datasets

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