Browse
Submit Data
Databases
API
Help

Dataset Information

12 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome of ?yingfish (Cheilopogon spilonotopterus) from South China Sea.

ABSTRACT: Flyingfishes are epipelagic specialists that are easily distinguished by their enlarged fins, which are used for gliding leaps over the surface of the water. In this study, we described the complete mitochondrial genome of Cheilopogon spilonotopterus. The genome is 16,527?bp in length, encoding the standard set of 13 protein-coding genes, 22 tRNA genes and two rRNA genes, with circular organization. The overall base composition of the whole mitochondrial genome was A (28.86%), T (26.96%), G (16.66%) and C (27.52%) with an AT bias of 55.82%. The ATG initiation codon is used in all protein-coding genes except COX1, and the stop codons of all the 13 protein-coding genes were complete.

SUBMITTER: Xu L

PROVIDER: S-EPMC7800126 | biostudies-literature | 2018 Jun

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete mitochondrial genome of ﬂyingfish (Cheilopogon spilonotopterus) from South China Sea.

Xu Lei L Wang Xuehui X Li Hong H Du Feiyan F

Mitochondrial DNA. Part B, Resources 20180618 2

Flyingfishes are epipelagic specialists that are easily distinguished by their enlarged fins, which are used for gliding leaps over the surface of the water. In this study, we described the complete mitochondrial genome of Cheilopogon spilonotopterus. The genome is 16,527 bp in length, encoding the standard set of 13 protein-coding genes, 22 tRNA genes and two rRNA genes, with circular organization. The overall base composition of the whole mitochondrial genome was A (28.86%), T (26.96%), ...[more]

PMID: 33474287

Similar Datasets

The complete mitochondrial genome of oceanic puffer (Lagocephalus lagocephalus) from South China Sea.

Project description:Lagocephalus lagocephalus is one of genus Lagocephalus and widely distributed in tropical and temperate oceans. In this study, we described the complete mitochondrial genome of L. lagocephalus. The genome is 166,443?bp in length, encoding the standard set of 13 protein-coding genes (PCGs), 22 transfer RNA genes, 2 ribosomal RNA genes, and a non-coding D-loop, with circular organization. The overall base composition of the whole mitochondrial genome was A (27.95%), T (25.07%), G (16.14%), and C (30.83%) with an AT bias of 53.03%. The longest PCG of these species was ND5, whereas the shortest ATP8.

| S-EPMC7707739 | biostudies-literature

The complete mitochondrial genome of Perciformes fish (Brama dussumieri) from South China Sea.

Project description:Brama dussumieri is one of the members of the family Bramidae and is widely distributed in the North Pacific Ocean. In this study, we described the complete mitochondrial genome of B. dussumieri. The genome is 16,996bp in length, encoding the standard set of 13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes, with circular organization. The overall base composition of the whole mitochondrial genome was A (26.21%), T (25.65%), G (16.83%) and C (31.31%) with an AT bias of 51.86%. The ATG initiation codons are used in all protein-coding genes except COX1, and the stop codons of all the 13 protein-coding genes were complete.

| S-EPMC7800298 | biostudies-literature

The complete mitochondrial genome of middle-sized form of Sthenoteuthis oualaniensis (Cephalopoda: Ommastrephidae) from the South China Sea.

Project description:The purpleback flying squid (Sthenoteuthis oualaniensis) is a pelagic squid with tremendous potential for commercial exploitation. Sthenoteuthis oualaniensis comprises two forms in the South China Sea, medium-sized form and dwarf form. In this study, we described the complete mitochondrial genome of medium-sized form of S. oualaniensis. The genome is 20,309 bp in length, encoding the standard set of 13 protein-coding genes, 20 tRNA genes, and two rRNA genes, with circular organization. The overall base composition of the whole mitochondrial genome was A (35.86%), T (33.36%), G (11.63%), and C (19.15%) with an AT bias of 69.22%. The longest protein-coding gene of these species was ND5, whereas the shortest ATP8.

| S-EPMC7782023 | biostudies-literature

The complete mitochondrial DNA genome of a cone snail, Conus betulinus (Neogastropoda: Conidae), from the South China sea.

Project description:The complete mitochondrial genome of the tubular cone snail Conus betulinus is presented in this study. The C. betulinus mitochondrial genome was 16,240 bp with 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes, and a non-coding AT-rich region (D-loop). The overall base composition was estimated to be 25.67% for A, 38.26% for T, 21.38% for G, and 14.69% for C, with a high A + T content of 63.93%. Phylogenetic analyses based on 13 PCGs showed the close relationship of vermivorous C. betulinus with the common ancestor of molluscivorous Conus textile and Conus gloriamaris, providing a basis for further studies on the phylogenetics of cone snails according to their dietary type.

| S-EPMC8143595 | biostudies-literature

The complete mitochondrial genome of Tylonycteris fulvida (Chiroptera: Vespertilionidae) in South China

Project description:Abstract The complete mitochondrial genome of Tylonycteris fulvida (Peters, 1872) was obtained using high-throughput sequencing technology. The genome is a circular molecule of 16,621 bp length, containing 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and a control region. A phylogenetic tree of 13 protein-coding genes was constructed using IQ-TREE. Our result suggests that T. fulvida cluster within Chiroptera and Fereuungulata. The complete mitochondrial genome sequence of T. fulvida will be helpful for future taxonomic and phylogenetic studies on Chiroptera.

| S-EPMC8547857 | biostudies-literature

South China Sea viromes

Project description:South China Sea viromes Metagenome

| PRJNA535364 | ENA

the South China Sea

Project description:the South China Sea Raw sequence reads

| PRJNA751181 | ENA

Complete genome sequence of Paracoccus marcusii phage vB_PmaS-R3 isolated from the South China Sea.

Project description:Paracoccus spp. are isolated from both terrestrial and aquatic habitats, indicating their ubiquitous existence in the environment. Here we present the first phage isolated from this genus, vB_PmaS-R3, and its complete genome sequence. Paracoccus phage vB_PmaS-R3 is a siphophage isolated from the South China Sea. The genome sequence is 42,093 bp, with a G?+?C content of 56.36 %. Fifty-two open reading frames were predicted from the genome. The genome can mainly be divided into three regions: genes for DNA metabolism, regulatory genes and structure forming genes. Genes encoding DNA metabolism and structural proteins showed high sequence homology to corresponding genes of Burkholderia phage KL1 and Pseudomonas phage PA73. In addition, four gene transfer agent-like genes were found in the vB_PmaS-R3 genome. A putative L-alanoyl-D-glutamate peptidase was predicted as the endolysin. A MazG gene was found in the vB_PmaS-R3 genome, which indicates genomic adaption to the nutrient-limited marine environment.

| S-EPMC4641407 | biostudies-literature

Targeted microarray analysis of three symbiotic cyanobacterial diazotroph strains in the South China Sea

Project description:We designed a new specific mRNA microarray targeting a subset of genes (748) of the diazotrophs Richelia intracellularis and Calothrix rhizosoleniae (genomes RintRC01, RintHH01, RintHM01 and CalSC01) which associate with diatom hosts. The aim was to be able to describe the gene expressions of genes related to several metabolic pathways and how they possibly differed between the closely related strains based on environment and host association. To better understand how the different environments might affect gene expressions, the samples were taken in depth profiles, at night and day, during a cruise in the South China Sea.

2019-10-31 | GSE139588 | GEO

Next generation sequencing yields the complete mitochondrial genome of the darkfin hind Cephalopholis urodeta (Serranidae) from the Mischief Reef, South China Sea.

Project description:The complete mitochondrial genome of the Cephalopholis urodeta (Serranidae: Epinephelinae) was sequenced by next-generation sequencing method on the basis of one female specimen collected from coral reef areas at the Mischief Reef, South China Sea. The mitogenome is 16,593 bp in length, including 13 protein-coding genes, 22 tRNA genes, two rRNA genes and a D-loop region. The overall content of A + T is 55.66%, which is significantly higher than the C + G content (44.34%). Among four bases, C shows the lowest frequency (15.99%). Phylogenetic tree based on the 13 protein-coding genes was constructed for analyzing the position of C. urodeta. The results provide useful insights into further studies on population genetics and phylogenetics of groupers.

| S-EPMC8797725 | biostudies-literature